Alignments for a candidate for ilvC in Methanothermobacter thermautotrophicus Delta H

Align acetohydroxy-acid isomeroreductase subunit (EC 1.1.1.383) (characterized)
to candidate WP_048061053.1 MTH_RS06895 ketol-acid reductoisomerase

Query= metacyc::MONOMER-11920
         (328 letters)



>NCBI__GCF_000008645.1:WP_048061053.1
          Length = 328

 Score =  654 bits (1688), Expect = 0.0
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MKIYYENDIDMEILADKKIAVIGYGSQGEAQARNMADSGLNVIVGLRRGGSSWKKAHDDG 60
           MKIYYENDIDMEILADKKIAVIGYGSQGEAQARNMADSGLNVIVGLRRGGSSWKKAHDDG
Sbjct: 1   MKIYYENDIDMEILADKKIAVIGYGSQGEAQARNMADSGLNVIVGLRRGGSSWKKAHDDG 60

Query: 61  MNVMTIEDASREADIIHILIPDEIQETVFEQSIRPYLKEGNTISFSHGYNIHYGYIKAPE 120
           MNVMTIEDASREADIIHILIPDEIQETVFEQSIRPYLKEGNTISFSHGYNIHYGYIKAPE
Sbjct: 61  MNVMTIEDASREADIIHILIPDEIQETVFEQSIRPYLKEGNTISFSHGYNIHYGYIKAPE 120

Query: 121 GVNVTMVAPKGPGAMVRRTYLEGFGIPGLVAVEVDATGDAMEQALAMAKACGLARAGVLE 180
           GVNVTMVAPKGPGAMVRRTYLEGFGIPGLVAVEVDATGDAMEQALAMAKACGLARAGVLE
Sbjct: 121 GVNVTMVAPKGPGAMVRRTYLEGFGIPGLVAVEVDATGDAMEQALAMAKACGLARAGVLE 180

Query: 181 TTFREETETDLFGEQAVLCGGVTELINTAFKTLVRAGYQPEIAYFETCHELKLIVDLIYE 240
           TTFREETETDLFGEQAVLCGGVTELINTAFKTLVRAGYQPEIAYFETCHELKLIVDLIYE
Sbjct: 181 TTFREETETDLFGEQAVLCGGVTELINTAFKTLVRAGYQPEIAYFETCHELKLIVDLIYE 240

Query: 241 RGFRGMWHNVSNTAEFGGLTRRGRIITEETEKEMDEILKEIQNGKFAKEWALENRAGAPM 300
           RGFRGMWHNVSNTAEFGGLTRRGRIITEETEKEMDEILKEIQNGKFAKEWALENRAGAPM
Sbjct: 241 RGFRGMWHNVSNTAEFGGLTRRGRIITEETEKEMDEILKEIQNGKFAKEWALENRAGAPM 300

Query: 301 LKRMRKLESELEIEEVGSKLRKLCGLEK 328
           LKRMRKLESELEIEEVGSKLRKLCGLEK
Sbjct: 301 LKRMRKLESELEIEEVGSKLRKLCGLEK 328


Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 566
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 328
Length adjustment: 28
Effective length of query: 300
Effective length of database: 300
Effective search space:    90000
Effective search space used:    90000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_048061053.1 MTH_RS06895 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.22070.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22070.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.