GapMind for catabolism of small carbon sources

 

Protein WP_048102475.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_048102475.1

Length: 479 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 49 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism gabD med succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 40% 97% 363.6 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism gabD med succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 40% 97% 363.6 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
putrescine catabolism gabD med succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 40% 97% 363.6 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-phenylalanine catabolism pad-dh med phenylacetaldehyde dehydrogenase (EC 1.2.1.39) (characterized) 41% 97% 357.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
4-hydroxybenzoate catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
2'-deoxyinosine catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
2-deoxy-D-ribose catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
ethanol catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-threonine catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
thymidine catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-tryptophan catabolism adh med Aldehyde dehydrogenase 5, mitochondrial; EC 1.2.1.5 (characterized) 40% 90% 351.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 94% 329.7 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 94% 329.7 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
putrescine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 94% 329.7 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism davD lo Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 40% 96% 342 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism davD lo Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 40% 96% 342 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-lysine catabolism davD lo Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 40% 96% 342 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-proline catabolism davD lo Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 40% 96% 342 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-fucose catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 35% 95% 327 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-rhamnose catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 35% 95% 327 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-threonine catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 35% 95% 327 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
4-hydroxybenzoate catabolism praB lo 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) (characterized) 36% 98% 317.4 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-tryptophan catabolism praB lo 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) (characterized) 36% 98% 317.4 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arabinose catabolism xacF lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 36% 97% 317 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
D-galacturonate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 36% 97% 317 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
D-glucuronate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 36% 97% 317 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
D-xylose catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 (characterized) 36% 97% 317 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arabinose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 37% 99% 315.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
D-xylose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 37% 99% 315.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-tryptophan catabolism nbaE lo 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 (characterized) 37% 97% 314.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism kauB lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 34% 97% 310.5 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 34% 97% 310.5 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 34% 97% 310.5 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
putrescine catabolism puuC lo gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 34% 97% 310.5 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-lysine catabolism patD lo aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 35% 99% 309.3 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 36% 89% 280.8 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism rocA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 36% 89% 280.8 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 36% 89% 280.8 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism rocA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 36% 89% 280.8 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-proline catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 36% 89% 280.8 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-isoleucine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
myo-inositol catabolism mmsA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
propionate catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-threonine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-valine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-valine catabolism mmsA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 34% 97% 273.1 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-lysine catabolism amaB lo Alpha-aminoadipic semialdehyde dehydrogenase; Alpha-AASA dehydrogenase; Aldehyde dehydrogenase family 7 member A1; Antiquitin-1; Betaine aldehyde dehydrogenase; Delta1-piperideine-6-carboxylate dehydrogenase; P6c dehydrogenase; EC 1.2.1.31; EC 1.2.1.3; EC 1.2.1.8 (characterized) 30% 86% 221.5 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-arginine catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 31% 92% 193 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0
L-citrulline catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 31% 92% 193 long-chain-aldehyde dehydrogenase (EC 1.2.1.48) 43% 374.0

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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