GapMind for catabolism of small carbon sources

 

Protein WP_048102559.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_048102559.1

Length: 329 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 17 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 95% 139 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-leucine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 95% 139 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-valine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 95% 139 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-isoleucine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 31% 95% 123.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-leucine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 31% 95% 123.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-valine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 31% 95% 123.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-arabinose catabolism xylGsa lo Xylose/arabinose import ATP-binding protein XylG; EC 7.5.2.13 (characterized, see rationale) 31% 87% 122.1 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-phenylalanine catabolism livG lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 92% 120.9 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-proline catabolism HSERO_RS00895 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 92% 120.9 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-serine catabolism Ac3H11_1693 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 92% 120.9 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-tyrosine catabolism Ac3H11_1693 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 92% 120.9 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-alanine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 30% 94% 118.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-serine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 30% 94% 118.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-threonine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 30% 94% 118.2 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-arginine catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 30% 96% 105.5 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-glutamate catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 30% 96% 105.5 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9
L-histidine catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 30% 96% 105.5 ABC-type xenobiotic transporter (EC 7.6.2.2) 39% 221.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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