GapMind for catabolism of small carbon sources

 

Protein WP_048103454.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_048103454.1

Length: 288 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 7 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-alanine catabolism braG lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-histidine catabolism natE lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-leucine catabolism natE lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-proline catabolism natE lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-serine catabolism braG lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-threonine catabolism braG lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 33% 92% 119.8 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3
L-proline catabolism HSERO_RS00895 lo ABC-type branched-chain amino acid transport system, ATPase component protein (characterized, see rationale) 30% 94% 110.5 ABC transporter ATP binding domain, component of ABC lantibiotic NAI-107 immunity exporter, MlbYZ 42% 215.3

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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