Alignments for a candidate for hisD in Methanobacterium lacus AL-21

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (characterized)
to candidate WP_048186596.1 METBO_RS06820 histidinol dehydrogenase

Query= SwissProt::P06988
         (434 letters)



>NCBI__GCF_000191585.1:WP_048186596.1
          Length = 430

 Score =  337 bits (865), Expect = 3e-97
 Identities = 185/421 (43%), Positives = 264/421 (62%), Gaps = 9/421 (2%)

Query: 18  RQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIAAAS 77
           ++L+ R  +  + +I  TV  I++ VK RGDEAL +Y+ KFD   +  +KV  E I ++ 
Sbjct: 12  QELIERSMLDENTAID-TVTAIINEVKNRGDEALGDYTKKFDGAELDTIKVDEETINSSL 70

Query: 78  ERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAP 137
            +L ++L +A+  A  NI  FH  Q       E   GV   Q+ RP+ SVG YIPGG A 
Sbjct: 71  SKLDNDLVKALEQAASNIAKFHENQIPDEWSTEVDEGVTAGQIVRPLDSVGCYIPGGRAV 130

Query: 138 LFSTVLMLATPASIAGCKKVVLCSPP----PIADEILYAAQLCGVQDVFNVGGAQAIAAL 193
             ST+LM   PA IAG K+++ C+PP     + D +L AA++ G  +V+ VGGAQA+AA+
Sbjct: 131 YPSTILMTVIPAKIAGVKRIICCTPPQPDGTVKDVVLAAAKVAGATEVYMVGGAQAVAAM 190

Query: 194 AFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVA 253
           A+GTES+P+VDKI GPGN FVT AK+ V  ++D   ID PAGPSEVL+IAD  A P F+A
Sbjct: 191 AYGTESIPRVDKIVGPGNIFVTAAKKLVYGQVD---IDFPAGPSEVLIIADETADPAFIA 247

Query: 254 SDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVTKDL 313
            D+++QAEH P++   L+T +  +A++V   +  QL  + R+E   ++LN++ LIV  D+
Sbjct: 248 MDIMAQAEHDPNAACALVTTSKKVAKQVDILIAEQLNNMERSEIITESLNSNGLIVVADI 307

Query: 314 AQ-CVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTY 372
            +  ++ SN Y PEHLII TR+    ++ IT+AGS+FLG+ +P +AGDY SGTNHVLPT 
Sbjct: 308 MEDAIKFSNAYAPEHLIIMTRDPEADLEEITNAGSIFLGELTPVAAGDYGSGTNHVLPTS 367

Query: 373 GYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKE 432
           G     S L    F K+ TVQ LS++G   L   +  LA  E L AH  +  LR   +K+
Sbjct: 368 GCARMYSGLSAESFVKKPTVQRLSEQGVLNLDEMVTKLAEYEGLHAHAESFKLRTEKVKK 427

Query: 433 Q 433
           +
Sbjct: 428 E 428


Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 431
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 430
Length adjustment: 32
Effective length of query: 402
Effective length of database: 398
Effective search space:   159996
Effective search space used:   159996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_048186596.1 METBO_RS06820 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.9075.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9075.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.