Alignments for a candidate for metA in Herbaspirillum autotrophicum IAM 14942

Align Homoserine O-succinyltransferase; HST; Homoserine transsuccinylase; HTS; EC 2.3.1.46 (characterized)
to candidate WP_050460920.1 AKL27_RS01895 homoserine O-succinyltransferase

Query= SwissProt::G4RES5
         (306 letters)



>NCBI__GCF_001189915.1:WP_050460920.1
          Length = 308

 Score =  345 bits (886), Expect = e-100
 Identities = 159/307 (51%), Positives = 216/307 (70%), Gaps = 2/307 (0%)

Query: 1   MPIRIPDQLPARKTLETEGVVVMDQSRSARQDIRPLQFGLLNLMPNKQRTETQFARLIAS 60
           MPI+IP  LPA   LE EGV+VMD++    Q  RPL+ GLLNLMP+K  TE Q ARL+ +
Sbjct: 1   MPIKIPKGLPALSALEKEGVMVMDEAGPTFQYHRPLRIGLLNLMPDKINTEIQIARLLGA 60

Query: 61  TPLQIDLTLVRVADPLSKSTPEDYLQNFYSTWEDVRAKKFDGFVVTGAPIANMPFEDVRY 120
           TPLQ++LTL++ +  + K+T  +++ +FY  W D+R +KFDGF++TGAPI  MPFE+V Y
Sbjct: 61  TPLQVELTLIKTSSYVPKNTSSEHIASFYHDWSDIREQKFDGFIITGAPIETMPFEEVSY 120

Query: 121 WPEMLEIMDWTQTNVHHTMFICWGAQAALHHLHGVKRYRMEHKAFGVYRHKVLDTRHPFL 180
           W E+  I  WTQTNVH  + ICWGAQAA+H+ H + RY +  KAFGV+ H  LD+  P+L
Sbjct: 121 WGELTHIFQWTQTNVHSCLNICWGAQAAMHYFHNMPRYLLNEKAFGVFSHHGLDSCSPYL 180

Query: 181 RGFSDDLAVPVSRYNDIDRQSLSP--DLDILIDSDEVGICMLDDRKYRAAYMLNHLEYDN 238
           +GF DD  +PVSR+ ++ R  + P   + +LIDS E G+C+L D ++ A ++ NH+EYD+
Sbjct: 181 KGFPDDFHIPVSRWMEMRRTDIPPGSGISVLIDSSETGLCLLHDPRHHALHIFNHIEYDS 240

Query: 239 TSLADEYHRDIEAGLDTPLPVNLFPGNDPSRMPENRWRSHAHLLFQNWINEIYQTTPYEL 298
           T+LADEY RD +AG    LP N FPG+  +  P N+WR HAHLLF NWIN I+QTTP +L
Sbjct: 241 TTLADEYFRDRDAGRSIHLPRNYFPGDCETLHPRNQWRGHAHLLFGNWINRIFQTTPADL 300

Query: 299 EKVGTGE 305
             +G  E
Sbjct: 301 ATIGHPE 307


Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 340
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 308
Length adjustment: 27
Effective length of query: 279
Effective length of database: 281
Effective search space:    78399
Effective search space used:    78399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_050460920.1 AKL27_RS01895 (homoserine O-succinyltransferase)
to HMM TIGR01001 (metA: homoserine O-succinyltransferase (EC 2.3.1.46))

Software error:

../bin/blast/fastacmd -i /tmp/list.31335.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31335.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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