Alignments for a candidate for serB in Herbaspirillum autotrophicum IAM 14942

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_050462119.1 AKL27_RS06370 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_001189915.1:WP_050462119.1
          Length = 280

 Score =  235 bits (600), Expect = 6e-67
 Identities = 123/215 (57%), Positives = 158/215 (73%), Gaps = 5/215 (2%)

Query: 21  LSDFKLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALL 80
           L+DFKL+A DMDSTLI IEC+DEIAD  G K +VA ITEAAMRGE+ ++ ESL +RVALL
Sbjct: 70  LADFKLVAMDMDSTLITIECIDEIADMQGLKPQVAEITEAAMRGEL-EFSESLARRVALL 128

Query: 81  KGVSVASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTR 140
           KG+  +++  VY  RLRL+PGA R++QA +  GLK LLVSGGFTFFT+R++  LG+DY  
Sbjct: 129 KGLDASALQRVYDERLRLSPGAERMLQAVQAVGLKTLLVSGGFTFFTERMKQRLGLDYAH 188

Query: 141 SNVLETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMM 200
           +NVLE  DG L+G+++    G + D EEKR  +   C +L +   QAI MGDGANDL MM
Sbjct: 189 ANVLEVVDGKLSGKVL----GGVVDAEEKRLTVERVCRELNVPASQAIVMGDGANDLKMM 244

Query: 201 GEAGLSVAYHAKPRVREQAMVAINEGGLDRLLELV 235
             +GLSVA+ AKP VR QA VA+N  GLD +L ++
Sbjct: 245 AVSGLSVAFRAKPVVRAQADVALNFVGLDGILNIL 279


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 212
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 280
Length adjustment: 24
Effective length of query: 212
Effective length of database: 256
Effective search space:    54272
Effective search space used:    54272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_050462119.1 AKL27_RS06370 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.23048.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23048.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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