Alignments for a candidate for thrC in Herbaspirillum autotrophicum IAM 14942

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_050462303.1 AKL27_RS07655 threonine synthase

Query= BRENDA::Q2SWH9
         (483 letters)



>NCBI__GCF_001189915.1:WP_050462303.1
          Length = 486

 Score =  694 bits (1790), Expect = 0.0
 Identities = 349/487 (71%), Positives = 402/487 (82%), Gaps = 7/487 (1%)

Query: 1   MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPSEYPQVSADELARWRTLPYADLAFEI 60
           M Y+STRG       +FS+ILLGGLA DGGLYLP+EYPQVS  EL +WR+L YADLA+E+
Sbjct: 1   MQYVSTRGHAATP--SFSEILLGGLAPDGGLYLPAEYPQVSRAELDQWRSLSYADLAYEV 58

Query: 61  LSKFCDDIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGTENGAPVSLLELSNG 120
           L KF  DI  ADL+A+T +TY ADVY + R G NAADITPL  L  ++G  + L  LSNG
Sbjct: 59  LRKFATDIPDADLKALTHKTYRADVYCNVRAGENAADITPLRVLEQQDGKKLVLQGLSNG 118

Query: 121 PTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPH 180
           PTLAFKDMAMQLLGNLFEY LA++   LNILGATSGDTGSAAEYAMRGK+G+RVFMLSPH
Sbjct: 119 PTLAFKDMAMQLLGNLFEYALARNQAQLNILGATSGDTGSAAEYAMRGKQGIRVFMLSPH 178

Query: 181 KKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSINWAR 240
           KKMSAFQTAQM+SLQDPNIFN+AV GVFDDCQDIVKAVSND  +KA QKIGTVNSINWAR
Sbjct: 179 KKMSAFQTAQMFSLQDPNIFNIAVEGVFDDCQDIVKAVSNDLGYKAAQKIGTVNSINWAR 238

Query: 241 VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDV 300
           VVAQVVYYF+GY +AT ++DE+VSFTVPSGNFGN+CAGHIARMMGLPI KLVVATNENDV
Sbjct: 239 VVAQVVYYFRGYLSATTASDEQVSFTVPSGNFGNICAGHIARMMGLPIAKLVVATNENDV 298

Query: 301 LDEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRDVEQKG 360
           LDEFFRTG YRVR + +TYHTSSPSMDISKASNFERFV+DLLGRD ARV  LF  V+  G
Sbjct: 299 LDEFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFVYDLLGRDSARVKALFHQVDTAG 358

Query: 361 GFDLAAS-----GDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAR 415
           GFDL+ +      +F  V  +GF SG+STHADR+ TIR    +Y   +DTHTADG+KVAR
Sbjct: 359 GFDLSGAAGSDGNEFESVIRYGFASGKSTHADRLETIRFAERQYGITVDTHTADGIKVAR 418

Query: 416 EHLRPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALPQRFEVVDANAQQVKD 475
           EHL+PGV M+VLETA P KF E+IREALG++  RPA F+ +EALPQRFEV+ A+A ++K 
Sbjct: 419 EHLQPGVTMIVLETALPAKFNETIREALGRDAERPAGFENIEALPQRFEVMAADAARIKQ 478

Query: 476 FIAAHTG 482
           F+AAHTG
Sbjct: 479 FVAAHTG 485


Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 719
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 486
Length adjustment: 34
Effective length of query: 449
Effective length of database: 452
Effective search space:   202948
Effective search space used:   202948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_050462303.1 AKL27_RS07655 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13984.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13984.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.