Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_050464099.1 AKL27_RS17280 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_001189915.1:WP_050464099.1
Length = 1247
Score = 1472 bits (3810), Expect = 0.0
Identities = 773/1244 (62%), Positives = 922/1244 (74%), Gaps = 38/1244 (3%)
Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCD-----LKGNNDLLVLSKPE 62
LR +++RIL+LDG MGTMIQ Y+L E D+RGERFA + +KGNN+LL L++P
Sbjct: 13 LRDLMSQRILILDGAMGTMIQQYKLTEEDYRGERFAGFSVPGKELFVKGNNELLSLTQPH 72
Query: 63 VIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTART 122
+I IH Y AGAD+IETNTF +T +A DY M L E+N +A+LARA D+++ T
Sbjct: 73 IIQEIHEQYLAAGADLIETNTFGATGVAQDDYHMAHLVYEMNVQSARLARAACDKYS--T 130
Query: 123 PEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIET 182
P+KPR+VAG LGPT +TASISPDVNDPA RN++FD LV Y E T+ALVEGGAD++L+ET
Sbjct: 131 PDKPRFVAGALGPTPKTASISPDVNDPAARNVSFDQLVTTYLEQTRALVEGGADVLLVET 190
Query: 183 VFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALT 242
+FDTLN KAA+FA+ T FE G LPIMISGT+TDASGR LSGQT AF+NS+RHA LT
Sbjct: 191 IFDTLNCKAALFALDTFFEESGKRLPIMISGTVTDASGRILSGQTVPAFWNSIRHARPLT 250
Query: 243 FGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGE--YDLDADTMAKQIREWAQ 300
GLNCALG +R Y +ELS+IA+ +V +PNAGLPN + +D D + ++E+A+
Sbjct: 251 VGLNCALGAALMRPYAEELSKIADTFVCIYPNAGLPNPMSDTGFDETPDVTSALLKEFAE 310
Query: 301 AGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVG 360
+GF+N+ GGCCGTTP HI A++ V +APRK+PE RLSGLEP I + SL+VNVG
Sbjct: 311 SGFVNVAGGCCGTTPPHIKAIAETVASIAPRKVPEGTHEMRLSGLEPFTINDQSLYVNVG 370
Query: 361 ERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLI 420
ERTNVTGS F RLI E+Y EAL VARQQVENGAQIIDINMDE MLD+ AAM RFLNLI
Sbjct: 371 ERTNVTGSKAFARLILNEQYDEALAVARQQVENGAQIIDINMDEAMLDSVAAMTRFLNLI 430
Query: 421 AGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAV 480
A EPDIARVPIMIDSSKW VIE GLKC+QGK IVNSISMKEG + F+H AKL RRYGAAV
Sbjct: 431 ASEPDIARVPIMIDSSKWSVIEAGLKCVQGKSIVNSISMKEGEEKFLHEAKLCRRYGAAV 490
Query: 481 VVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQ 540
+VMAFDE GQADT RK EIC RAY++L ++VGFPPEDIIFDPNIFAVATGIEEHNNYA
Sbjct: 491 IVMAFDEVGQADTFERKTEICERAYRLLVDKVGFPPEDIIFDPNIFAVATGIEEHNNYAV 550
Query: 541 DFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAG 600
DFI A I + LP+A ISGGVSNVSFSFRGNDP REAIH VFLY+AI+ GM MGIVNAG
Sbjct: 551 DFIEATRWIHQNLPYAKISGGVSNVSFSFRGNDPAREAIHTVFLYHAIKAGMTMGIVNAG 610
Query: 601 QLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVN 660
+ +YDDLP EL++ VEDV+LNRR D TER++++A K D EWR V
Sbjct: 611 MIGVYDDLPVELKERVEDVVLNRRPDATERMIDIAATL---KAGDKKEEATLEWRGETVQ 667
Query: 661 KRLEYSLVKGITEFIEQDTEEARQQ----ATRPIEVIEGPLMDGMNVVGDLFGEGKMFLP 716
KRL ++LV GIT++I +DTEEARQQ RPI VIEGPLMDGMN+VGDLFG+GKMFLP
Sbjct: 668 KRLAHALVHGITQWIVEDTEEARQQLLRDGGRPIHVIEGPLMDGMNIVGDLFGQGKMFLP 727
Query: 717 QVVKSARVMKQAVAYLEPFIEASKE--------QGKTNGKMVIATVKGDVHDIGKNIVGV 768
QVVKSARVMKQAVA+L PFIE K K GK+VIATVKGDVHDIGKNIV V
Sbjct: 728 QVVKSARVMKQAVAHLIPFIEEEKRLHEQETGIASKPKGKIVIATVKGDVHDIGKNIVSV 787
Query: 769 VLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMER----Q 824
VLQCNN+E+V++GVMVP +IL AKE NAD+IGLSGLITPSL+EM VAKEM+R
Sbjct: 788 VLQCNNFEVVNMGVMVPCSQILAKAKEENADIIGLSGLITPSLEEMAYVAKEMQRDPYFS 847
Query: 825 GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTR 884
G +PLLIGGATTS+AHTAVKI NY GP VYV +ASR V V +LL+ Q+D +VA
Sbjct: 848 GLKMPLLIGGATTSRAHTAVKIAPNYDGPVVYVPDASRAVAVAQSLLTPEQKDQYVADIN 907
Query: 885 KEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNY 944
+Y +R QH KK P V++ AARDN A ++ P R + V+ + TL NY
Sbjct: 908 ADYVRIREQHANKK-AVPLVSIAAARDNKTALEFAPLKPKFIGRRVFKNVD--LATLSNY 964
Query: 945 IDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPA 1004
IDW PFF TW LAG YP IL DEVVG A ++F++A +L K+ + L G+V L PA
Sbjct: 965 IDWGPFFQTWDLAGPYPAILTDEVVGEAASKVFEEAQALLKKIIDGRWLTANGIVSLLPA 1024
Query: 1005 NRV-GDDIEIYRDETRTHVINVSHHLRQQTEK---TGFA--NYCLADFVAPKLSGKADYI 1058
N V DDIEIY D+TRT V + +RQQT K G A N CL+DF+APK SG ADYI
Sbjct: 1025 NTVHDDDIEIYTDDTRTKVALTYYGVRQQTVKPVIDGVARPNQCLSDFIAPKQSGIADYI 1084
Query: 1059 GAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNE 1118
G FAVT GL + FE HDDY+ IM+KALADRLAEAFAEYLHERVRK WGYAP E
Sbjct: 1085 GMFAVTSGLGIEKYEKRFEDAHDDYSSIMLKALADRLAEAFAEYLHERVRKDLWGYAPQE 1144
Query: 1119 NLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVS 1178
LS+ ELI+E Y GIRPA GYPACPEHT K +E+++ ++ GM +TES+AM+PGASVS
Sbjct: 1145 QLSSAELIKEKYVGIRPAAGYPACPEHTVKKEAFEVMQCDE-IGMMVTESYAMFPGASVS 1203
Query: 1179 GWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNL 1222
G+YF+HP+SKY+ V +I DQV D A R+G+ +VERWLAPNL
Sbjct: 1204 GFYFAHPESKYFVVGKIGDDQVSDMAERRGVPKEDVERWLAPNL 1247
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3663
Number of extensions: 162
Number of successful extensions: 13
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1247
Length adjustment: 48
Effective length of query: 1179
Effective length of database: 1199
Effective search space: 1413621
Effective search space used: 1413621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate WP_050464099.1 AKL27_RS17280 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.15640.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15640.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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