Alignments for a candidate for serB in Herbaspirillum autotrophicum IAM 14942

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_050464489.1 AKL27_RS19290 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_001189915.1:WP_050464489.1
          Length = 291

 Score =  185 bits (470), Expect = 7e-52
 Identities = 101/212 (47%), Positives = 131/212 (61%), Gaps = 4/212 (1%)

Query: 21  LSDFKLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALL 80
           L+ + L+ FDMDSTLINIEC+DE+AD  GRKAEVAAITE AMRGE  DY +S+  RV LL
Sbjct: 72  LASYGLLVFDMDSTLINIECIDELADCVGRKAEVAAITERAMRGEEMDYDQSMIARVQLL 131

Query: 81  KGVSVASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTR 140
           +G++   +  VY  RL + PGA +LVQ  + AGLK  ++SGGF +F DR+R EL ID   
Sbjct: 132 RGLAARDLKRVYDERLTITPGARQLVQQARRAGLKTAIISGGFDYFADRLRAELEIDVAI 191

Query: 141 SNVLETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMM 200
           SN L    G +TG M + P     + + K   +   C + G++    I  GDGANDL MM
Sbjct: 192 SNRLSMEHGYVTGGMDNPP----VNAQVKASTVKSLCAEWGVALSDTIVAGDGANDLQMM 247

Query: 201 GEAGLSVAYHAKPRVREQAMVAINEGGLDRLL 232
             AG+SV Y  K  V E+  + I    LD +L
Sbjct: 248 AIAGVSVGYRPKQIVAEKVDIQIAHLALDSVL 279


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 180
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 291
Length adjustment: 25
Effective length of query: 211
Effective length of database: 266
Effective search space:    56126
Effective search space used:    56126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_050464489.1 AKL27_RS19290 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.27790.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27790.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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