Alignments for a candidate for thrC in Desulfatiglans anilini DSM 4660

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_051184861.1 H567_RS24955 threonine synthase

Query= curated2:P29363
         (469 letters)



>NCBI__GCF_000422285.1:WP_051184861.1
          Length = 487

 Score =  252 bits (644), Expect = 2e-71
 Identities = 167/462 (36%), Positives = 248/462 (53%), Gaps = 34/462 (7%)

Query: 1   MRYISTRGQAPALNFEDVLLAGLASDGGLYV--PENLPRFTLEEIASWVGLPYHELAFRV 58
           +RY ST   +   +F+  L+ GLAS+ GLY+    ++P+   E +    G+ Y E+AF V
Sbjct: 4   IRYYSTNDASERADFKTALMRGLASNYGLYMLARADVPKIPREVVRGMSGMSYAEIAFEV 63

Query: 59  MRPFVAGSIADADFKKILEETYGVFAHDAVAP--LRQLNGNEWVLELFHGPTLAFKDFAL 116
           + PF+ G I +   + IL + Y     + V P  +++L G  +++ L HGPT +FKD+A 
Sbjct: 64  LYPFLEGDIGERALRAILNDAY----REEVIPTEIQRLTGRTYIMWLTHGPTYSFKDYAA 119

Query: 117 QLLGRLLDHVLAKRGERVVIMGATSGDTGSAAIEGCRRCDNVDIFIMHPHNRVSEVQRRQ 176
           +  GR+LDH L + GER V+  ATSGDTG A  +     ++VD  +  P   ++E QRRQ
Sbjct: 120 RFFGRMLDHFLEETGERRVVAVATSGDTGGAVADALHGLESVDTVVFFPQGSITERQRRQ 179

Query: 177 MTTILGDNIHNIAIEGNFDDCQEMVKASFADQGFLK-----GTRLVAVNSINWARIMAQI 231
           MTT++G N++   + G+FD CQ M K    D+ F +       R  + NSI+  R++ Q 
Sbjct: 180 MTTLMG-NVYAFEVNGDFDVCQAMAKRLLGDRRFARDCFGDADRFTSANSISLGRLLPQA 238

Query: 232 VYYFHAALQLGAPHRSVAFSVPTGNFGDIFAGYLARNMGLPVSQLIVATNRNDILHRFMS 291
           VY F A  ++ A    +  SVP+GNFGD+    LAR MGLP+ +++   N N     F++
Sbjct: 239 VYPFFACSRIPADGEPLIASVPSGNFGDMMGTVLAREMGLPIGRVLCGVNENREFPEFLA 298

Query: 292 GNRYDKDTLHPSL-SPSMDIMVS--SNFERLLFDLHGRNGKAVAELLDAFKASGKLSVED 348
              Y    + PS+ SPS  ++VS  SNF RL+ D +G        + D    +GK+  E 
Sbjct: 299 TGGY---LVRPSVKSPSSAMIVSNPSNFARLV-DFYG------GHVFDRRDEAGKIIEEG 348

Query: 349 --QRWTE---ARKLFDSLAVSDEQTCETIAEVYRSSGELLDPHTAIGVRAARECRRSL-S 402
              R  +    R+ F S+AVS+    + I EVY   G +++PH A+G R           
Sbjct: 349 VMDRMPDLEAMRRDFYSIAVSNPDHYQAIREVYERFGVIIEPHGAVGWRTLDTFLEGRHD 408

Query: 403 VPMVTLGTAHPVKFPEAVEKAGIGQAPALPAHLADLFEREER 444
            P V   TA P KFP+ VEKA IG  PA+P  +A     EER
Sbjct: 409 RPAVIYETADPGKFPDDVEKA-IGIVPAVPGRMAAQARLEER 449


Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 528
Number of extensions: 28
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 487
Length adjustment: 34
Effective length of query: 435
Effective length of database: 453
Effective search space:   197055
Effective search space used:   197055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_051184861.1 H567_RS24955 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.24284.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24284.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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