Alignments for a candidate for argB in Beijerinckia mobilis UQM 1969

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_051955568.1 DL88_RS03260 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000745425.1:WP_051955568.1
          Length = 274

 Score =  267 bits (683), Expect = 2e-76
 Identities = 131/280 (46%), Positives = 196/280 (70%), Gaps = 8/280 (2%)

Query: 17  EALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLL 76
           +ALP++ R+    +V+KYGG+AM+ EE    FARD+VL++  G+NPVVVHGGGPQIG +L
Sbjct: 2   QALPHMLRYDEAIVVVKYGGHAMDDEESARNFARDMVLLEQSGVNPVVVHGGGPQIGAML 61

Query: 77  KRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRA 136
            +L I+S F +G+R+TD AT+++VEMVL G +NK IV  IN  GG AIGL GKD  ++ A
Sbjct: 62  AKLGIKSAFSNGLRITDRATIEIVEMVLAGSINKQIVGFINAAGGHAIGLCGKDGNMVTA 121

Query: 137 KKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNI 196
            KL  +  +        +D+G VGE   V+  +L+ ++  + IPV+AP+  G +GE+YNI
Sbjct: 122 HKLGHSDAS--------VDLGFVGEPEKVDTTVLDQVLGRELIPVLAPVAQGVDGETYNI 173

Query: 197 NADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELIADGTIYGGMLPKI 256
           NAD  AG +A AL+A++L+ LT++ G++D+  +++  L  +++  LIADGTI GGM+PK+
Sbjct: 174 NADTFAGAIAGALRAKRLLFLTDVPGVLDRDKKLIKELKVDEIRALIADGTITGGMIPKV 233

Query: 257 RCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 296
              + A++ GV    I+DG+ P+AVL+E+ TD G GTLI+
Sbjct: 234 ETCIYALEQGVEGVVILDGKTPHAVLIELLTDHGAGTLIT 273


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 268
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 274
Length adjustment: 26
Effective length of query: 275
Effective length of database: 248
Effective search space:    68200
Effective search space used:    68200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_051955568.1 DL88_RS03260 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.22367.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22367.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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