Alignments for a candidate for hisC in Algiphilus aromaticivorans DG1253

Align histidinol-phosphate aminotransferase (EC 2.6.1.9) (characterized)
to candidate WP_052367594.1 U743_RS06100 histidinol-phosphate transaminase

Query= reanno::DvH:206463
         (373 letters)



>NCBI__GCF_000733765.1:WP_052367594.1
          Length = 380

 Score =  253 bits (646), Expect = 6e-72
 Identities = 148/355 (41%), Positives = 202/355 (56%), Gaps = 7/355 (1%)

Query: 21  PYVPGLSIDEIRDRFGLADVVKLASNENPLGTSPVVQRTLKTKADLAFRYAQSGNPRLTR 80
           PY PG+ IDE++ R GL+DV+KLASNENPLG SP     L+ +  LA RY   G   L  
Sbjct: 19  PYQPGMPIDELQRRLGLSDVIKLASNENPLGCSPQAAAVLRGEHQLA-RYPDGGGFALKA 77

Query: 81  AIAAHHGVAPERVVAGNGSDEIIDLLIRVRATPGKHNIVAFRPCFSIYELQAKFCG---- 136
            IAA HGVAPE+V  GNGS+++++ + R+   PG+  + + R  F++Y L A        
Sbjct: 78  KIAAFHGVAPEQVTLGNGSNDLLEFVARIFLGPGRAAMYS-RHAFAVYPLAAAAQNAPSV 136

Query: 137 -LEFRQADLRPDFTFDWDAFLAATDENTAIAFVTTPDNPSGWCPPVSELEHVARTLPPSC 195
            +  R  D    +  D   F  A  +  A  F+  P+NP+G C P   +      +P S 
Sbjct: 137 VVPARPVDAEDAYGHDLVGFARALSDEVAAIFIANPNNPTGTCLPGGAVADFLGEVPEST 196

Query: 196 LFVIDEAYMDFCGDEAAHSLLSRLDAFPNIAVLRTFSKSFGLAGLRLGYGILPERLADYL 255
           + V+DEAY D+        + + L   PN+ V RTFSK +GLA LRLGYG+    LAD L
Sbjct: 197 IVVLDEAYWDYQDPSTRPDIDALLARHPNLLVTRTFSKIYGLAALRLGYGLSHPALADLL 256

Query: 256 HRVRLPFSVNILAEEAGLAALEDTVFRSETLRVTAEGRAYIAEGLTALGCEVMPSWANFI 315
           +RVR PF+ N LA  AG AAL D  F +E++ + A  RA +   L+A G +V+PS ANF+
Sbjct: 257 NRVRQPFNNNSLALAAGEAALADQAFVAESVALNARERARLERELSARGLQVLPSHANFV 316

Query: 316 MFRPPTDATDLFEALLRRGIIIRPLKSYGLPQHLRVSVGNADENRRFIEACKEIL 370
                 DA  + + LL  GII+RP+ SY +P  LRVSVG   EN RF+ A   I+
Sbjct: 317 AVGFGRDAAPIHQGLLEAGIIVRPMGSYEMPHFLRVSVGTETENDRFLAALDGIM 371


Lambda     K      H
   0.323    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 391
Number of extensions: 25
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 380
Length adjustment: 30
Effective length of query: 343
Effective length of database: 350
Effective search space:   120050
Effective search space used:   120050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)

Align candidate WP_052367594.1 U743_RS06100 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.9502.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9502.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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