Alignments for a candidate for ilvC in Nitriliruptor alkaliphilus DSM 45188

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_052664679.1 NITAL_RS03260 ketol-acid reductoisomerase

Query= BRENDA::Q59818
         (333 letters)



>NCBI__GCF_000969705.1:WP_052664679.1
          Length = 336

 Score =  427 bits (1098), Expect = e-124
 Identities = 203/327 (62%), Positives = 258/327 (78%)

Query: 2   AELFYDADADLSIIQGRKVAVIGYGSQGHAHALSLRDSGVDVRVGLHEGSKSKAKAEEQG 61
           A +FYD DADLS+IQGR VAV+GYGSQGHAHAL+LRDSGVDVRVGL  GS S+AKAEE G
Sbjct: 3   ATIFYDQDADLSLIQGRTVAVLGYGSQGHAHALNLRDSGVDVRVGLRPGSASRAKAEEAG 62

Query: 62  LRVVTPSEAAAEADVIMILVPDPIQAQVYEESIKDNLKDGDALFFGHGLNIRFGFIKPPA 121
           L+V+  + AAAEADV++IL PD +Q Q++ + + D L +GDAL FGHG N+ +G+I PPA
Sbjct: 63  LKVLDTNAAAAEADVVVILAPDTVQKQMWHDGLADQLTEGDALVFGHGFNVHYGWIDPPA 122

Query: 122 GVDVCMVAPKGPGHLVRRQYEEGRGVPCIAAVEQDATGNGFALALSYAKGIGGTRAGVIK 181
           G+DV +VAPK PGH+ RR YE+G+GVP + AV QDATG    L +SYA  +G TRAGV++
Sbjct: 123 GIDVFLVAPKSPGHIARRTYEQGQGVPGLVAVHQDATGTALQLGVSYAAALGLTRAGVLQ 182

Query: 182 TTFTEETETDLFGEQAVLCGGTAALVKAGFETLTEAGYQPEIAYFECLHELKLIVDLMYE 241
           TTF EETETDLFGEQAVLCGG + LV+AGFETL EAGYQPE AYFE LHELKLIVD+++E
Sbjct: 183 TTFAEETETDLFGEQAVLCGGVSHLVQAGFETLVEAGYQPEAAYFETLHELKLIVDMIFE 242

Query: 242 GGLEKMRWSISETAEWGDYVTGPRIITDATKAEMKKVLAEIQDGTFAQAWMDEYHGGLKK 301
           GGL  MR+S+SETAE+GDYV+GPR+I D  K  M+ +L +IQDGTFA A  DE+ GG K 
Sbjct: 243 GGLSWMRYSVSETAEYGDYVSGPRVIDDRAKQAMRDILTDIQDGTFAAALADEWEGGAKT 302

Query: 302 YNEYKTQDENHLLETTGKELRKLMSWV 328
           +   +   ++H +E  G+++R ++ ++
Sbjct: 303 FEANRAAGKDHQIEQVGRKVRDMIPFI 329


Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 408
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 336
Length adjustment: 28
Effective length of query: 305
Effective length of database: 308
Effective search space:    93940
Effective search space used:    93940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_052664679.1 NITAL_RS03260 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.2002.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2002.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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