Alignments for a candidate for asp-kinase in Nitriliruptor alkaliphilus DSM 45188

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_052664755.1 NITAL_RS03510 aspartate kinase

Query= BRENDA::P9WPX3
         (421 letters)



>NCBI__GCF_000969705.1:WP_052664755.1
          Length = 415

 Score =  479 bits (1232), Expect = e-140
 Identities = 247/410 (60%), Positives = 316/410 (77%), Gaps = 3/410 (0%)

Query: 1   MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPA 60
           MA+VVQKYGG+SV D +R++RVA+R+  T + GN  VVVVSAMG TTDDL+ +AQ++  A
Sbjct: 1   MAIVVQKYGGTSVGDTDRMKRVADRVARTHRDGNQTVVVVSAMGKTTDDLVAMAQRISDA 60

Query: 61  PPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKIIDVTPGR 120
           PP RELD+LLT+GERIS +L+AMA+   G  A+SFTGSQAG+IT   HG A+I+++TPGR
Sbjct: 61  PPQRELDILLTSGERISMSLLAMALAEHGVPAKSFTGSQAGIITDAVHGKARILEITPGR 120

Query: 121 LQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIF 180
           +Q AL+EG VV+VAGFQGVSQDTKD+T+LGRGGSDTTAVA+AAALGADVCEIYTDVDG+F
Sbjct: 121 VQEALDEGNVVIVAGFQGVSQDTKDITSLGRGGSDTTAVALAAALGADVCEIYTDVDGVF 180

Query: 181 SADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYSDRPGTV 240
           +ADPRIV  ARKL  V++EE LEM A GA VL  R VE+ R H + +HVRSS+S  PGT 
Sbjct: 181 TADPRIVATARKLSYVSYEEALEMTAHGAGVLQTRSVEFGRNHGVRIHVRSSFSYTPGT- 239

Query: 241 VVGSIKDVPMEDPILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV 300
            VG  ++  +ED I++GVAHD SEAKVT++ + D PG AAK+F  +ADA +NIDM++QNV
Sbjct: 240 WVGPREESTVEDAIISGVAHDTSEAKVTVMKVSDQPGIAAKLFSTLADAKINIDMIVQNV 299

Query: 301 SKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGV 360
           S   DG+TDI+FT  R     A   L+     IG   +L D+++ KVSL+GAGM++HPGV
Sbjct: 300 S--ADGRTDISFTLPRGDTNQARAILEPYAEAIGAEGVLVDENVAKVSLVGAGMKTHPGV 357

Query: 361 TATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLGGD 410
            A    AL+A GVNIE+ISTS IR+SV+    +++ AV+A+HEAFGL  D
Sbjct: 358 AARMFSALSAAGVNIEMISTSTIRVSVVIAKDQVEPAVLAVHEAFGLSED 407


Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 521
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 415
Length adjustment: 32
Effective length of query: 389
Effective length of database: 383
Effective search space:   148987
Effective search space used:   148987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_052664755.1 NITAL_RS03510 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.6304.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6304.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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