Alignments for a candidate for gatA in Nitriliruptor alkaliphilus DSM 45188

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_052666283.1 NITAL_RS11100 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000969705.1:WP_052666283.1
          Length = 528

 Score =  465 bits (1196), Expect = e-135
 Identities = 255/491 (51%), Positives = 317/491 (64%), Gaps = 25/491 (5%)

Query: 10  ELKQLIHKKEIKISDLVDESYKRIQAVD-----------------DKVQAFLALDEERAR 52
           EL   +  +E+   + VD    RI AVD                 D V A+LA+    AR
Sbjct: 11  ELAARLQARELSSREAVDAHLDRIAAVDGVEADGDVWVPRAELGPDDVHAYLAVTAAAAR 70

Query: 53  AYAKELDEAVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQ 112
           A+A ++D       E   L G+P+ +KD +  +G  TTC S++LE + P YDATV  RL+
Sbjct: 71  AHADDVDARRTAGVELSPLAGVPLALKDVLTMRGAPTTCGSRMLEGWVPPYDATVTGRLR 130

Query: 113 DAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLG 172
           D + V +GK NMDEFAMGSSTENSAY  T+NPW+LD VPGGSSGGSA+AVA    P S+G
Sbjct: 131 DGDVVVLGKTNMDEFAMGSSTENSAYGPTRNPWDLDRVPGGSSGGSASAVAGLLAPLSIG 190

Query: 173 SDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISG 232
           +DTGGSIRQPA+  G+VG+KPTYG VSRYGLVAFASSLDQ GP  RTVED A L + I+G
Sbjct: 191 TDTGGSIRQPAALTGLVGVKPTYGTVSRYGLVAFASSLDQAGPFARTVEDAAMLHELIAG 250

Query: 233 VDKMDSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGA 292
            D  DSTS    VP   +++   ++GL++ V  E  GEG           AL  LE LGA
Sbjct: 251 HDPRDSTSVPDPVPPLSATMRDGVEGLRVGVISELRGEGYEPGVARVYDEALARLESLGA 310

Query: 293 TWEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFG 352
           T  +VSLPH+ Y L  YYL++ SEAS+NLARFDG+RYG R D A+    +   TR  GFG
Sbjct: 311 TLVDVSLPHAAYGLPAYYLIAPSEASSNLARFDGVRYGVRVD-AETAEQMNAATREAGFG 369

Query: 353 NEVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIG 412
            EVKRRIM+GT ALSSGYYDAYY +A KVRTLI +DF   FE  DV+V PT+P  AF +G
Sbjct: 370 PEVKRRIMIGTHALSSGYYDAYYLQASKVRTLIARDFAAAFEDADVLVSPTSPAVAFGLG 429

Query: 413 ENTKDPLTMYANDILTIPVNLAGVPGISVPCGLAD-------GLPLGLQIIGKHFDESTV 465
             T DPL MY ND+ T+P +LAGVP +S+P GLA+        LP+GLQ++     +  +
Sbjct: 430 TKTADPLAMYLNDVATVPASLAGVPAMSLPAGLAEAPDAPGSALPVGLQLMAPLLRDDLL 489

Query: 466 YRVAHAFEQAT 476
           YRV  AFEQAT
Sbjct: 490 YRVGWAFEQAT 500


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 668
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 528
Length adjustment: 34
Effective length of query: 451
Effective length of database: 494
Effective search space:   222794
Effective search space used:   222794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_052666283.1 NITAL_RS11100 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.27917.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27917.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.