Alignments for a candidate for ilvD in Thermus aquaticus YT-1

Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_053767874.1 BVI061214_RS07550 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-18815
         (557 letters)



>NCBI__GCF_001280255.1:WP_053767874.1
          Length = 567

 Score =  547 bits (1410), Expect = e-160
 Identities = 275/552 (49%), Positives = 377/552 (68%), Gaps = 1/552 (0%)

Query: 6   RSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADAAIDAI 65
           RS  I +G+ ++P RSM  A+G   EDF +P VG+ N  +   PCN  L+ LA      +
Sbjct: 2   RSDRIKKGLQQAPARSMLRAVGVGDEDFGRPFVGVVNTFTDGMPCNYHLRELALDLKAGL 61

Query: 66  KASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVIGGCDK 125
           + +   P  FG P ISDG+SMGT GM+ SL+SREVIAD IE  AQG   DG+ V+  CDK
Sbjct: 62  REAGVFPFEFGAPAISDGISMGTPGMRASLVSREVIADSIELVAQGYLYDGMAVLSACDK 121

Query: 126 NMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQEDFEGVE 185
            +PGG + + R+ VPG+ +YGGTI PG W+G+ LTIV  FEAVG+  AGR++ E+   +E
Sbjct: 122 TIPGGAMGVIRSGVPGMVLYGGTIAPGEWRGRKLTIVEVFEAVGQRAAGRITDEELLEIE 181

Query: 186 KNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLVEAIKQ 245
           + A P  G+CGG YTANTM+ + E LG+S +  + +     EK  +  E+ R+L  AI+ 
Sbjct: 182 RRAIPGPGACGGQYTANTMAMALEVLGLSPMGYNAIPAVHPEKPRTTKEAGRILAWAIEH 241

Query: 246 DIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRKVPVIC 305
           D KP+D +TR+S  NA+A + ATGGSTNAVLH LA+A    VE ++DDF+R+ RK PVI 
Sbjct: 242 DWKPQDFLTRRSFLNAIAAVAATGGSTNAVLHLLAMAKEVGVELSLDDFDRVSRKTPVIA 301

Query: 306 NLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTPRADQD 365
           +L+P G Y A +L++AGG P V K LL+AG+L G+  T+TGRTLAEE+E         Q 
Sbjct: 302 DLRPWGTYTAWELYEAGGTPLVFKRLLEAGLLFGEEKTLTGRTLAEEVEQA-FREAEGQK 360

Query: 366 VILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEAILADK 425
           V+ P+E+AL  +G L +L+GNLA  GAV K+ G +     GPARVF+ E+ AM  +LA +
Sbjct: 361 VVFPVERALKPQGGLVVLRGNLAPRGAVLKLAGTERTYFEGPARVFDSEEEAMAKVLAKE 420

Query: 426 INAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMVVGHVA 485
           I  GD++V+RY+GPKG PGMPEML+ TSAI+G+GLG  V  +TDGRFSGGT G++VGH+A
Sbjct: 421 IRPGDVVVIRYVGPKGAPGMPEMLSVTSAIVGEGLGPEVALLTDGRFSGGTRGLMVGHIA 480

Query: 486 PEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVLAKFSK 545
           PEA+VGG IAL++EGD + ID    LL++ + +EELARR+ +WK   P +  GV A+++ 
Sbjct: 481 PEAFVGGPIALLKEGDRVRIDVENRLLEVLLPEEELARRKESWKPRPPAFRHGVFARYAA 540

Query: 546 LASTASKGAVTD 557
           L + A +GAV +
Sbjct: 541 LVAQADEGAVLE 552


Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 980
Number of extensions: 53
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 567
Length adjustment: 36
Effective length of query: 521
Effective length of database: 531
Effective search space:   276651
Effective search space used:   276651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_053767874.1 BVI061214_RS07550 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.29065.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29065.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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