Alignments for a candidate for asd in Roseburia faecis M72

Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_055067768.1 M72_RS07470 aspartate-semialdehyde dehydrogenase

Query= BRENDA::Q4WWR8
         (363 letters)



>NCBI__GCF_001406815.1:WP_055067768.1
          Length = 363

 Score =  248 bits (633), Expect = 2e-70
 Identities = 146/364 (40%), Positives = 211/364 (57%), Gaps = 13/364 (3%)

Query: 6   KKKCGVLGATGSVGQRFILLLADHPFLELHAIGASNRSAGKKYKDAV--RWKQTTAMSER 63
           K K G+LG TG VGQRFI LL +HP+ E+  I AS RSAGK Y+ AV  RWK  T M E 
Sbjct: 4   KLKVGILGGTGMVGQRFISLLENHPWFEVTTIAASPRSAGKTYEQAVGDRWKMDTPMPEA 63

Query: 64  LSNLVLRDCRADQ--FSDCDLVFSGLN--SDVAGEIEMEFIKAEIPVFSNAKNYRKHPLV 119
           + N+V+ +    +   S  D VFS ++   +   +IE ++ K E PV SN   +R  P V
Sbjct: 64  VKNIVVMNVNEVEQVASQVDFVFSAVDMTKEEIKKIEEDYAKTETPVVSNNSAHRWTPDV 123

Query: 120 PLVVPTVNPQHLDLIPHQRKEFGLKKGFLVCNSNCAVIGVVIPFAALQAKFGPVEEVEVF 179
           P+VVP +NPQH+++I +Q++  G K+GF+    NC++     P      +F P E V   
Sbjct: 124 PMVVPEINPQHMEVIKYQKERLGTKRGFVAVKPNCSIQSYA-PVLTAWKEFEPYEVVAT- 181

Query: 180 TEQAVSGAGYPGVPSMDIMDNVIPYISGEEDKLENEAQKILGSLNADATAFDEQKGLTVG 239
           T QA+SGAG       +++ N+IPYI GEE+K E E  +I G ++ +           + 
Sbjct: 182 TYQAISGAGKTFKDWPEMLGNIIPYIGGEEEKSEKEPLRIWGHVDDEKKQIVPATSPVIT 241

Query: 240 ATCTRVGVTDGHMAFVSLRFKNRPGPSAEEVKQAMREYQSEAQKLGCPSAPREAIKVFDE 299
             C RV V +GH A V ++FK +  P+ E++ +A++ Y    Q+L  PSAP   I+  +E
Sbjct: 242 CQCIRVPVLNGHTAAVFVKFKKK--PTKEQLIEALKNYSGVPQELKLPSAPEHFIQYLEE 299

Query: 300 PDRPQPRLDRDISKGYTVSVGRVREAAPGSYFDLRFAALSHNTVIGAAGSSILNAEVAVI 359
            +RPQ  LD +   G  +SVGR+RE    + +D +F  LSHNTV GAAG ++L AE+   
Sbjct: 300 DNRPQVSLDVNFEHGMGISVGRLRE---DTVYDWKFVGLSHNTVRGAAGGAVLCAELLKA 356

Query: 360 KGYI 363
           +GYI
Sbjct: 357 QGYI 360


Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 296
Number of extensions: 16
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 363
Length adjustment: 29
Effective length of query: 334
Effective length of database: 334
Effective search space:   111556
Effective search space used:   111556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_055067768.1 M72_RS07470 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR00978 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10933.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10933.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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