Alignments for a candidate for ilvC in Roseburia faecis M72

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_055067783.1 M72_RS07555 ketol-acid reductoisomerase

Query= BRENDA::D6ERQ9
         (332 letters)



>NCBI__GCF_001406815.1:WP_055067783.1
          Length = 341

 Score =  406 bits (1043), Expect = e-118
 Identities = 196/331 (59%), Positives = 252/331 (76%), Gaps = 2/331 (0%)

Query: 2   AELFYDADADLSIIQGRKVAVIGYGSQGHAHALSLRDSGVDVRVGLHEGSKSKAKAEEQG 61
           A +FY  D +LS++ G+ +A+IGYGSQGHAHAL+L++SG +V +GL+EGSKS  KAEEQG
Sbjct: 4   ARIFYQEDCNLSLLDGKTIAIIGYGSQGHAHALNLKESGCNVIIGLYEGSKSWKKAEEQG 63

Query: 62  LRVVPVAEAAAEADVIMILVPDPIQAEVYEKDIKDNLKDGDALFFGHGLNIRYGFIKPPA 121
            +V   AEAA +AD+IMIL+ D +QA++Y+KDI+ NL+ G+ L F HG NI +G IKPP 
Sbjct: 64  FKVYVAAEAAKKADIIMILINDELQADMYKKDIEPNLEPGNMLMFAHGFNIHFGCIKPPK 123

Query: 122 GVDVCMVAPKGPGHLVRRQYEEGRGVPCIAAVEQDATGNAFALALSYAKGIGGTRAGVIK 181
            VDV M+APK PGH VR +Y+ G+G PC+ AVEQDATG A+ LAL+Y  GIGG RAG+++
Sbjct: 124 DVDVTMIAPKAPGHTVRSEYQAGKGTPCLIAVEQDATGKAWDLALAYGLGIGGARAGLLE 183

Query: 182 TTFTEETETDLFGEQAVLCGGTAALVKAGFETLTEAGYQPEIAYFECLHELKLIVDLMYE 241
           TTF  ETETDLFGEQAVLCGG  AL++AGFETL EAGY P  AYFEC+HE+KLIVDL+Y+
Sbjct: 184 TTFRTETETDLFGEQAVLCGGVCALMQAGFETLCEAGYDPRNAYFECIHEMKLIVDLIYQ 243

Query: 242 GGLEKMRWSISETAEWGDYVTGPRIITDATKAEMKKVLAEIQDGTFAKNWMDEYH--GGL 299
            G   MR+SIS TAE+GDY+TGP+I+T  TK  MK++L +IQDGTFAK ++ +    G  
Sbjct: 244 SGFAGMRYSISNTAEYGDYITGPKIVTAETKKAMKQILTDIQDGTFAKEFLLDMSPAGRQ 303

Query: 300 KKYNEYKKQDSEHLLETTGKELRKLMSWVDE 330
             +   +K  SEH  E  G E+RKL SW +E
Sbjct: 304 VHFKAMRKLASEHPSEKVGAEIRKLYSWNNE 334


Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 390
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 341
Length adjustment: 28
Effective length of query: 304
Effective length of database: 313
Effective search space:    95152
Effective search space used:    95152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_055067783.1 M72_RS07555 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.25299.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25299.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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