Alignments for a candidate for thrC in Roseburia faecis M72

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_055067788.1 M72_RS07595 threonine synthase

Query= BRENDA::P16120
         (514 letters)



>NCBI__GCF_001406815.1:WP_055067788.1
          Length = 496

 Score =  280 bits (715), Expect = 1e-79
 Identities = 181/491 (36%), Positives = 270/491 (54%), Gaps = 42/491 (8%)

Query: 7   VYRSTRSSSPKTISFEEAIIQGLATDGGLFIPPTIPQVDQATLFNDWSKLSFQDLAFAIM 66
           +Y STR+   K ++  +AI++GLA DGGLF+P  IP +D     +  + +S+Q+ A+ +M
Sbjct: 4   MYSSTRNDKVK-LTASQAILKGLADDGGLFVPERIPALDVP--MDTLADMSYQETAYEVM 60

Query: 67  RLYIAQEEIPDADLKDLIKRSY-STFRSDEVTPLVQNVTGDKENLHILELFHGPTYAFKD 125
             +    +  + +LKD IK++Y S F + E+ PLV     D +  + LELFHGPT AFKD
Sbjct: 61  SRFFT--DFTEDELKDCIKKAYDSKFDTPEIAPLV-----DADGAYYLELFHGPTIAFKD 113

Query: 126 VALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYP 185
           +AL  + +L     ++         K  I ++ ATSGDTG AA+ G    +   + + YP
Sbjct: 114 MALSILPHLLITSARKNQV------KNDIVILTATSGDTGKAALAGFADVEGTKIVVFYP 167

Query: 186 TGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVG-----AVN 240
              +SPIQE+QM T    N   + + G FD  Q  VK +F D    ++ +V      + N
Sbjct: 168 KNGVSPIQEKQMITQKGANTCVVGIHGNFDQAQTGVKKMFNDTALEAELDVAGYQFSSAN 227

Query: 241 SINWARILAQMTYYFYSFFQA-TNGKDSK--KVKFVVPSGNFGDILAGYFAKKMGLPIEK 297
           SIN  R++ Q+ YY Y++ +   NG  +K  K+  VVP+GNFG+ILA ++AK MGLPI K
Sbjct: 228 SINIGRLIPQVAYYVYAYAKLYKNGAIAKDEKINVVVPTGNFGNILAAFYAKNMGLPIAK 287

Query: 298 LAIATNENDILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDL 357
           L  A+NEN +L  F  +G Y+R+     T SP+MDILISSN ERL++ +A      G+D 
Sbjct: 288 LICASNENKVLYDFFSTGTYDRNRDFILTSSPSMDILISSNLERLIYRIA------GND- 340

Query: 358 KAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHY 417
              E      +EL T+GK+ +    +     DF     S EET++TIKK+YE +     Y
Sbjct: 341 --AEKNTKMMEELSTDGKYAITDE-MRAQLADFYGNYTSEEETAKTIKKLYEDT----GY 393

Query: 418 ILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADAVNNALSGFSNYSFEKDV-L 476
           I+D HTAV     ++      D   + +  STA P KF  +V +A+     Y    D  L
Sbjct: 394 IIDTHTAVAAGVYDKYKKDTGDTETKTVIASTASPFKFTRSVMDAID--PKYDAMGDFEL 451

Query: 477 PEELKKLSTLK 487
            +EL ++  +K
Sbjct: 452 VDELSRIGNVK 462


Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 628
Number of extensions: 27
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 496
Length adjustment: 34
Effective length of query: 480
Effective length of database: 462
Effective search space:   221760
Effective search space used:   221760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_055067788.1 M72_RS07595 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.32408.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32408.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.