Alignments for a candidate for thrC in Stenotrophomonas chelatiphaga DSM 21508

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_057506743.1 ABB28_RS00505 threonine synthase

Query= reanno::Dyella79:N515DRAFT_0575
         (441 letters)



>NCBI__GCF_001431535.1:WP_057506743.1
          Length = 437

 Score =  508 bits (1308), Expect = e-148
 Identities = 277/433 (63%), Positives = 316/433 (72%), Gaps = 10/433 (2%)

Query: 9   STRGAAHGAGIGEAIAAGLAPDGGLYVPEALPSRRPDDFDPDGTLADTAARLLRPFFAGH 68
           STRG +    +  AIAAGLAPDGGLYVPE LP+ R     P  +LA TAA++L PFF G 
Sbjct: 5   STRGQSPAVSLSAAIAAGLAPDGGLYVPEQLPAPRQWVATP--SLAQTAAQVLAPFFDGD 62

Query: 69  ALAAELPAICAEAFCFDAPLRPLPQHPGAAMLELFHGPSAAFKDFGARFLASCFRRLRKA 128
            LA  LPAICAEAF F  PLR LP+  G  +LELFHGP+AAFKD GARFLA+   RLR  
Sbjct: 63  PLADALPAICAEAFDFPVPLRALPRR-GDHVLELFHGPTAAFKDVGARFLAATLARLRSG 121

Query: 129 GEAPLTILVATSGDTGAAVAAAFHRQPGVEVVILYPDGLVSPRQAHQLGCFGDNVRALRV 188
              PL I+VATSGDTGAAVAAAFHRQPG+ VV+LYPDG VSPRQAHQLGCFGDN++A RV
Sbjct: 122 ASTPLAIVVATSGDTGAAVAAAFHRQPGLRVVVLYPDGRVSPRQAHQLGCFGDNIQAFRV 181

Query: 189 AGRFDDCQRMVKAALNDTALQAQRPLSSANSISLGRLLPQMAYYAHASLRWWREHRRPLN 248
           AG FDDCQ +VK AL D ALQA  PLSSANSISLGRLLPQM+YYAHA+L+  +  R  LN
Sbjct: 182 AGSFDDCQALVKQALGDAALQAAVPLSSANSISLGRLLPQMSYYAHAALQHEQGGRAALN 241

Query: 249 FIVPTGNLGNALAAVWVREMGLPVGAIELACNANETLPDYFAGTPYAPRAAVATLANAMD 308
            +VPTGNLGNA+AA+  R +GLP+G I LA NAN+ LP YFAG  Y P  +VAT ANAMD
Sbjct: 242 LVVPTGNLGNAMAAILARAIGLPIGRIALATNANDVLPRYFAGADYQPAHSVATTANAMD 301

Query: 309 VGAPSNFERLRWTFPYDD-DLRGQLSSHSVDDDTIRATVRRHALEHGEVFCPHTATA--- 364
           VGAPSNFERLRW F  DD  LR   ++ +VDD  IRAT+       G+VFCPHTATA   
Sbjct: 302 VGAPSNFERLRWLFNGDDAALRQAFTAEAVDDVAIRATIASAHAGSGDVFCPHTATAVTV 361

Query: 365 MHRLDLRQEKADWAVVSTAHAAKFESVVEPLIGRGVAVPPALQAMLARPAQAEAIEASDD 424
           ++ L  +  K DWAVV+TAH AKFESVVEPLIG  VAVP AL A+L RPA AE + A   
Sbjct: 362 LNALRAKGSKGDWAVVATAHPAKFESVVEPLIGETVAVPLALDALLRRPAHAEPLAADYA 421

Query: 425 ALKQWL---LPQP 434
           AL+  L   LP P
Sbjct: 422 ALRAVLQAGLPSP 434


Lambda     K      H
   0.322    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 717
Number of extensions: 34
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 437
Length adjustment: 32
Effective length of query: 409
Effective length of database: 405
Effective search space:   165645
Effective search space used:   165645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_057506743.1 ABB28_RS00505 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19649.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.