Align Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 (characterized)
to candidate WP_057506750.1 ABB28_RS00540 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
Query= SwissProt::Q9S5G5 (355 letters) >NCBI__GCF_001431535.1:WP_057506750.1 Length = 357 Score = 374 bits (960), Expect = e-108 Identities = 188/354 (53%), Positives = 248/354 (70%), Gaps = 5/354 (1%) Query: 6 LFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFP 65 LFIDRDGTLI EP +D Q+D ++KL F VIP L+KL+ AG++ V+++NQDGLG++S+P Sbjct: 5 LFIDRDGTLIEEP-ADHQIDAYEKLRFVRDVIPALIKLRDAGWQFVIVSNQDGLGSESYP 63 Query: 66 QADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANS 125 QA FD PH LMM +F SQG+ F +VLI P + RKP + L+ YL ++++D A S Sbjct: 64 QAIFDAPHALMMHVFESQGITFRDVLIDTSWPHENLPTRKPGIGLMTAYLQDRSIDWARS 123 Query: 126 YVIGDRATDIQLAENMGINGLRYDRETL----NWPMIGEQLTRRDRYAHVVRNTKETQID 181 ++GDR TDIQ A+N+ I G + E +WP I L R A V RNTKET+I Sbjct: 124 AMVGDRLTDIQFAQNLNIRGFQLRTEEFGGDWDWPAIAHALADAPRTAVVQRNTKETRIR 183 Query: 182 VQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEINVKGDLYIDDHHTVEDTGLALGE 241 V++ LD + +I+TG+ FFDHML+QI HGG + I +GDL+ID+HHT+EDTGLALG+ Sbjct: 184 VELDLDAQAEPRIHTGLPFFDHMLEQIGKHGGISVRIQAEGDLHIDEHHTIEDTGLALGQ 243 Query: 242 ALKIALGDKRGICRFGFVLPMDECLARCALDISGRPHLEYKAEFTYQRVGDLSTEMIEHF 301 AL+ ALGDKRGI R+GF LPMDE LA ALD SGRP+ + EF +RVGDL TE++ HF Sbjct: 244 ALREALGDKRGIGRYGFTLPMDETLASAALDFSGRPYFVFDGEFKRERVGDLPTELVPHF 303 Query: 302 FRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGDTLPSSKGVL 355 FRSL G+ L+L+ +G NDHH+VE+ FKA R LR A+ +G LPS+KG L Sbjct: 304 FRSLCEAAGLNLNLQVRGDNDHHKVEACFKALARALRTAVARQGTELPSTKGAL 357 Lambda K H 0.322 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 400 Number of extensions: 11 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 355 Length of database: 357 Length adjustment: 29 Effective length of query: 326 Effective length of database: 328 Effective search space: 106928 Effective search space used: 106928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate WP_057506750.1 ABB28_RS00540 (bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB)
to HMM TIGR01261 (hisB: histidinol-phosphatase (EC 3.1.3.15))
../bin/blast/fastacmd -i /tmp/list.17007.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17007.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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