Alignments for a candidate for hutG' in Stenotrophomonas chelatiphaga DSM 21508

Align N-formylglutamate deformylase (EC 3.5.1.68) (characterized)
to candidate WP_057506765.1 ABB28_RS00615 N-formylglutamate deformylase

Query= reanno::Korea:Ga0059261_3962
         (264 letters)



>NCBI__GCF_001431535.1:WP_057506765.1
          Length = 284

 Score =  294 bits (753), Expect = 1e-84
 Identities = 153/271 (56%), Positives = 184/271 (67%), Gaps = 12/271 (4%)

Query: 2   IHVEQGSAPLIVSVPHAGTVIPADIQG-LVSPELARYDADLYVDHLYAFARGLDATIVRT 60
           + V +G APL++S PH GT +P D+ G  VSP LAR DAD +V  LYAFARGL AT VR+
Sbjct: 8   LEVHEGDAPLLISFPHTGTALPDDLAGRFVSPWLARRDADWWVHELYAFARGLGATTVRS 67

Query: 61  TVSRTVIDVNRDPSGQTLYPGQFTTGLCPIQTFDGTPLYEPGALPDAHEIERRRAEWFDP 120
           ++SR+VID+NRDPSG +LYPGQ TTGLCP+ TFD  PLY+P   PD  EI RRR  +F P
Sbjct: 68  SISRSVIDLNRDPSGVSLYPGQNTTGLCPLTTFDNQPLYKPAQEPDEAEILRRREAYFAP 127

Query: 121 YHTALAIQIERLRAIHPAIVVYDAHSIRSVVPKLFDGELPNFNIGT-----NDGTSCAPA 175
           YH ALA QI RLRA H  +VVYDAHSIRS +P LFDGELP FN+GT        TSC  A
Sbjct: 128 YHAALASQIARLRARHGTVVVYDAHSIRSRIPHLFDGELPQFNLGTAGPTGEVDTSCDNA 187

Query: 176 LTQAVEAICDASPYSRVTNGRFKGGWITRHYARPAGGVHSIQMELAMRTYLVETPAH--- 232
           L+  VE +C  S    V NGRFKGGWITRHY+   GGVHS+QMELA R Y+ E  A    
Sbjct: 188 LSDVVENLCRLSGLPHVRNGRFKGGWITRHYSDIPGGVHSLQMELACRGYMAEPAAEALD 247

Query: 233 ---WPPPWHEETAQACQSVLRPILSAAIDFA 260
              WP P  ++ A   +  L  +L+A ++FA
Sbjct: 248 AHSWPTPLDDDHATPLRHTLAQVLTACLEFA 278


Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 284
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 284
Length adjustment: 25
Effective length of query: 239
Effective length of database: 259
Effective search space:    61901
Effective search space used:    61901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_057506765.1 ABB28_RS00615 (N-formylglutamate deformylase)
to HMM TIGR02017 (hutG: N-formylglutamate deformylase (EC 3.5.1.68))

Software error:

../bin/blast/fastacmd -i /tmp/list.5748.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5748.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.