Alignments for a candidate for hutH in Stenotrophomonas chelatiphaga DSM 21508

Align Histidine ammonia-lyase (EC 4.3.1.3) (characterized)
to candidate WP_057506766.1 ABB28_RS00620 histidine ammonia-lyase

Query= reanno::Korea:Ga0059261_3963
         (497 letters)



>NCBI__GCF_001431535.1:WP_057506766.1
          Length = 517

 Score =  711 bits (1835), Expect = 0.0
 Identities = 373/505 (73%), Positives = 410/505 (81%), Gaps = 9/505 (1%)

Query: 1   MITPGYTPLSTWNAIYRGEAAPLDPSCRDKIQASADAVEAILARHEPVYGINTGFGKLAS 60
           ++ P + PL+ W  +YRG    LD +    ++ASA  VEAI+A+  PVYGINTGFGKLAS
Sbjct: 10  VLRPAHVPLAQWRQVYRGARIALDAAALPAVRASAATVEAIVAKGAPVYGINTGFGKLAS 69

Query: 61  VRIGDEDLETLQRNIVLSHAAGVGAPMPAPVVRLMIALKLASLAQGHSGVRPATIAMLQD 120
           VRI  EDL TLQRNIVLSHAAGVG PMP PVVRLM+ALKL SLAQG SGVR  T+ +L+ 
Sbjct: 70  VRIEPEDLATLQRNIVLSHAAGVGEPMPLPVVRLMMALKLVSLAQGASGVRVETLQLLEA 129

Query: 121 MLDRGITPIIPSQGSVGASGDLAPLAHLAAAMIGTGEVLVDGVVRPARDVLA-----PLT 175
           +L + + P+IP+QGSVGASGDLAPL+HLA+ MIG GE  V G    A D LA     PL 
Sbjct: 130 LLQQDVVPVIPAQGSVGASGDLAPLSHLASMMIGVGEAFVGGQRLSAADALARAGLQPLQ 189

Query: 176 LGPKEGLALLNGTQFSTAYALAALFETERLFRAALVTGALSTEAAKGSDTPFDPRIHQVR 235
           LG KEGLALLNGTQFSTAYALA LFE E +F+AALVTGALS EAAKGSDTPFDPRIH +R
Sbjct: 190 LGAKEGLALLNGTQFSTAYALAGLFEIEIVFQAALVTGALSVEAAKGSDTPFDPRIHSIR 249

Query: 236 GHRGQIEVADALAGLMSGSAIRASHREGDERVQDPYCLRCQPQVMGACLDLIRQAAATLA 295
           G RGQI  A AL  LM GSAIR SHR+ D RVQDPYCLRCQPQVMGA LD+IRQAA TL 
Sbjct: 250 GQRGQILTAAALRTLMQGSAIRESHRDNDVRVQDPYCLRCQPQVMGAALDIIRQAATTLE 309

Query: 296 IEANGVTDNPLIFPDTGEALSGGNFHAEPVAFAADMLAMALCEIGSLSERRIAMLVDPAL 355
           IEANGV+DNPL+F DTGEALSGGNFHAEPVAFAADMLAMA+CEIGS+SERR AMLVDPAL
Sbjct: 310 IEANGVSDNPLVFTDTGEALSGGNFHAEPVAFAADMLAMAICEIGSISERRTAMLVDPAL 369

Query: 356 SGLPAFLTPRPGLNSGFMIPQVTAAALVSENKQRAHPASVDSIPTSANQEDHVSMAGHGA 415
           SGLPAFLTPRPGLNSGFMIPQVTAAALVSENKQRA+PASVDSIPTSANQEDHVSMA HGA
Sbjct: 370 SGLPAFLTPRPGLNSGFMIPQVTAAALVSENKQRAYPASVDSIPTSANQEDHVSMAAHGA 429

Query: 416 RRLMEMAANLANVLGIEYLAAAQGCDFHAPLTSSEPLEAARSLLRNQVPHLEDDRHFAPD 475
           RRL++MA N ANV+GIE LAAAQGCDFHAPL SS PLEA R LLR QVP LE+DR+F PD
Sbjct: 430 RRLLQMAENAANVVGIELLAAAQGCDFHAPLQSSGPLEAVRVLLRAQVPTLEEDRYFHPD 489

Query: 476 MAAATALVAGGM----LGPYLPGIE 496
           M AAT LV  G     L   LP +E
Sbjct: 490 MLAATDLVRSGALASGLADVLPNVE 514


Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 842
Number of extensions: 37
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 517
Length adjustment: 34
Effective length of query: 463
Effective length of database: 483
Effective search space:   223629
Effective search space used:   223629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_057506766.1 ABB28_RS00620 (histidine ammonia-lyase)
to HMM TIGR01225 (hutH: histidine ammonia-lyase (EC 4.3.1.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.27220.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27220.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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