Alignments for a candidate for prpE in Stenotrophomonas chelatiphaga DSM 21508

Align propionate-CoA ligase (EC 6.2.1.17) (characterized)
to candidate WP_057507018.1 ABB28_RS02085 propionate--CoA ligase

Query= BRENDA::P77495
         (628 letters)



>NCBI__GCF_001431535.1:WP_057507018.1
          Length = 626

 Score =  760 bits (1963), Expect = 0.0
 Identities = 366/627 (58%), Positives = 472/627 (75%), Gaps = 4/627 (0%)

Query: 1   MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDR 60
           M + E Y+RSI+EPE FW E+A RI W  P  Q LD+SNPPF RW+  G TNLC+NA+DR
Sbjct: 1   MDYEETYRRSIDEPEAFWGEEANRIYWHKPPRQVLDYSNPPFRRWYVGGETNLCYNAVDR 60

Query: 61  WLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAE 120
            L ++P+ LAL+AVS+ET   R  T+RQL+ EVN  A++L+ L V  GDRV++YMP +AE
Sbjct: 61  HLAERPDQLALVAVSTETGTTREITYRQLYREVNDFAAVLKRLDVGHGDRVVIYMPNMAE 120

Query: 121 AHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDD 180
           A   +LACARIGA+HSVVFGGFA+H++A RIDDA+P L+++ADAG RGGK+IPYK ++D 
Sbjct: 121 AVFAMLACARIGAVHSVVFGGFAAHNLALRIDDARPKLLIAADAGMRGGKLIPYKGMVDA 180

Query: 181 AISQAQHQPRHVLLVDRGLAKMA-RVSGRDVDFASLRHQHIGARVPVAWLESNETSCILY 239
           A ++AQ+ P HVL+V RGL     R +GRDVD+A+LR +     VPV WLES+E S +LY
Sbjct: 181 ACAEAQNPPPHVLIVSRGLDPAEPRQAGRDVDYATLRAEVGEVDVPVQWLESSEPSYLLY 240

Query: 240 TSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLA 299
           TSGTTGKPKGVQRDVGGYAVA+A SM T+F  + G V F  SD+GW VGHSY VY PL+ 
Sbjct: 241 TSGTTGKPKGVQRDVGGYAVAMAQSMQTVFDCQPGQVMFSTSDVGWAVGHSYNVYGPLIG 300

Query: 300 GMATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVL 359
           G  +++YEGLPT PD G+WW + E+Y V  +FS+PTAIRVLKK     IR+HDL +L+ +
Sbjct: 301 GCTSLLYEGLPTNPDPGIWWALCEQYNVRTLFSSPTAIRVLKKHDVDFIRRHDLKALKYI 360

Query: 360 YLAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGY 419
           +LAGEPLDEPTA W +  L  P+IDNYWQTE+GWP + +  GLD +P R GSPG P  GY
Sbjct: 361 FLAGEPLDEPTAHWANEALGKPIIDNYWQTETGWPALTLLPGLDMKPVRFGSPGFPNLGY 420

Query: 420 NVQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYATFDW 479
            +++++E TG      +KG+LV+  PLPPGC+ T+W DD RF+++Y+S F   +Y++ DW
Sbjct: 421 RMKVIDENTGVEVAPGQKGVLVMTPPLPPGCMSTVWNDDARFLQSYFSHFKELLYSSLDW 480

Query: 480 GIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVA 539
            IRD DGY FILGRTDDVINVAGHRLGTREIEE+IS HP VAE AV+GVKD LKGQV + 
Sbjct: 481 AIRDEDGYTFILGRTDDVINVAGHRLGTREIEEAISGHPRVAEAAVIGVKDELKGQVPLV 540

Query: 540 FVIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQ 599
           FV  K+  + ED     ++   +MA V + +G   RPAH+  V+ LPKTRSGK+LRR++Q
Sbjct: 541 FVTLKQGLNGEDPAPVVAE---MMAAVTASLGAVARPAHIHVVNALPKTRSGKLLRRSLQ 597

Query: 600 AICEGRDPGDLTTIDDPASLDQIRQAM 626
           A+ E RDPGDL+T+DDPA+LD+IR+A+
Sbjct: 598 ALAEQRDPGDLSTLDDPAALDEIRRAL 624


Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1216
Number of extensions: 43
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 626
Length adjustment: 38
Effective length of query: 590
Effective length of database: 588
Effective search space:   346920
Effective search space used:   346920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)

Align candidate WP_057507018.1 ABB28_RS02085 (propionate--CoA ligase)
to HMM TIGR02316 (prpE: propionate--CoA ligase (EC 6.2.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.9450.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9450.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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