Align Acetyl-coenzyme A synthetase (EC 6.2.1.1) (characterized)
to candidate WP_057507083.1 ABB28_RS02385 acetate--CoA ligase
Query= reanno::pseudo5_N2C3_1:AO356_18695
(651 letters)
>NCBI__GCF_001431535.1:WP_057507083.1
Length = 647
Score = 879 bits (2271), Expect = 0.0
Identities = 423/644 (65%), Positives = 499/644 (77%), Gaps = 1/644 (0%)
Query: 4 ASLYPVRPEVAASTLTDEATYKAMYQQSVVNPDGFWREQAKRLDWIKPFTTVKQTSFDDH 63
A LYPV P+ A + D+ TY+ YQ S+ PD FW E A+RL W K + +K S+D
Sbjct: 2 ADLYPVDPQFAKNARIDKTTYQQQYQASIDAPDAFWGEAAQRLQWFKQPSIIKNVSYDLA 61
Query: 64 HVDIKWFADGTLNVSYNCLDRHLAERGDQIAIIWEGDDP-SESRNITYRELHEEVCKFAN 122
IKWF DG LN S NCLDR L +RG++ A+++E D P + ++++TYREL+E C+ N
Sbjct: 62 DFRIKWFEDGELNASVNCLDRQLEKRGEKTALLFEPDSPDAPAQHVTYRELYERTCRLGN 121
Query: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
ALR V +GD VTIY+PMI +A VAMLAC RIGAIHSVVFGGF+P ++A R+ DC SK+
Sbjct: 122 ALRNLGVKKGDRVTIYLPMIVDAAVAMLACARIGAIHSVVFGGFAPNSIADRVSDCASKL 181
Query: 183 VITADEGVRAGKKIPLKANVDDALTNPETSSIQKVIVCKRTAGNIKWNQHRDIWYEDLMK 242
+ITADEG+R GKKIPLKANVD AL P T++++ V+V + T G + RD W+ D++
Sbjct: 182 IITADEGLRGGKKIPLKANVDAALKLPGTNTVETVLVVRHTGGAVDMQAPRDRWFHDVVD 241
Query: 243 VAGTVCAPKEMGAEEALFILYTSGSTGKPKGVQHTTAGYLLYAALTHERVFDYKPGEVYW 302
C P+ M AE+ LFILYTSGSTGKPKGV HTT GYLLYAA THE VFD + ++YW
Sbjct: 242 SQPAECEPERMNAEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAYTHEAVFDLREDDIYW 301
Query: 303 CTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITRVAKVIDKHKVSILYTAPTAIR 362
CTADVGWVTGHSYIVYGPLANGAT+L+FEGVPNYPD +R VIDKHKVS+ YTAPTAIR
Sbjct: 302 CTADVGWVTGHSYIVYGPLANGATSLMFEGVPNYPDTSRFWNVIDKHKVSLFYTAPTAIR 361
Query: 363 AMMASGTAAVEGADGSSLRLLGSVGEPINPEAWDWYYKNVGKERCPIVDTWWQTETGGVL 422
A+M G V+ +SLRLLGSVGEPINPEAW WYY+ VG RCPIVDTWWQTETGG+L
Sbjct: 362 ALMREGEEPVKRTSRASLRLLGSVGEPINPEAWRWYYEVVGDSRCPIVDTWWQTETGGIL 421
Query: 423 ISPLPGATALKPGSATRPFFGVVPALVDNLGNLIEGAAEGNLVILDSWPGQARTLYGDHD 482
ISPLPGA LKPGSA+ PFFGV PALV+ G + +GA EGNL+I DSWPGQ RT+YGD
Sbjct: 422 ISPLPGAVDLKPGSASLPFFGVQPALVNADGEIKDGATEGNLIIRDSWPGQMRTVYGDDQ 481
Query: 483 RFVDTYFKTFSGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRMGTAEIESAMVAHPKV 542
RF+DTYF+T+ G YFTGDG RRDEDGYYWITGRVDDV+NVSGHR+GTAE+ESA+V+HPKV
Sbjct: 482 RFIDTYFRTYPGAYFTGDGCRRDEDGYYWITGRVDDVINVSGHRIGTAEVESALVSHPKV 541
Query: 543 AEAAVVGVPHDIKGQGIYVYVTLNAGEETSEALRLELKNWVRKEIGPIASPDVIQWAPGL 602
AEAAVVG PH++KGQGIY YVTL A E SE L EL WVRKEIGPIA+PD +QWAPGL
Sbjct: 542 AEAAVVGFPHEVKGQGIYAYVTLIADEAPSEELHKELVAWVRKEIGPIATPDHLQWAPGL 601
Query: 603 PKTRSGKIMRRILRKIATAEYDGLGDISTLADPGVVAHLIETHK 646
PKTRSGKIMRRILRKIA D LGD STLADP VVA L++ K
Sbjct: 602 PKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVASLVDERK 645
Lambda K H
0.318 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1394
Number of extensions: 53
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 647
Length adjustment: 38
Effective length of query: 613
Effective length of database: 609
Effective search space: 373317
Effective search space used: 373317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate WP_057507083.1 ABB28_RS02385 (acetate--CoA ligase)
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.20762.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20762.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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