Alignments for a candidate for rocF in Stenotrophomonas chelatiphaga DSM 21508

Align Arginase (EC 3.5.3.1) (characterized)
to candidate WP_057507546.1 ABB28_RS04805 arginase

Query= reanno::Dyella79:N515DRAFT_0348
         (304 letters)



>NCBI__GCF_001431535.1:WP_057507546.1
          Length = 305

 Score =  442 bits (1138), Expect = e-129
 Identities = 216/304 (71%), Positives = 243/304 (79%)

Query: 1   MGNQAVSLIGAPTDIGAGHRGASMGPEALRVANLQARLKARGIDVVDRGNLQGPLNPWEP 60
           M +  VSLIG PTDIGAG RGA +GPEALR+A L   L ARG+DV D GNL GP NPW  
Sbjct: 1   MTHLPVSLIGVPTDIGAGDRGARLGPEALRIAGLAEALSARGVDVRDVGNLDGPRNPWTA 60

Query: 61  PREGYRHLSAVVDWNRAVYEAIYGELSLGRLPVMLGGDHCLAIGSITAVARHCREHHKKL 120
           P  GYRHL  VV+WNR + EA   EL  GR+P+MLGGDHCL +GS+TAVAR CRE  K L
Sbjct: 61  PVHGYRHLDEVVEWNRVLMEASLSELRAGRMPIMLGGDHCLGVGSVTAVARWCREQGKDL 120

Query: 121 RVLWLDAHADFNTAQITPSGNIHGMPVACLCGMGPEELTTLGGSKPATAPDVFRQIGIRS 180
           RVLWLDAH+DFNT+ ITPSGN+HGMPVACLCG+GP+ LT LGG  PA  P   RQIGIRS
Sbjct: 121 RVLWLDAHSDFNTSDITPSGNVHGMPVACLCGLGPDALTRLGGDAPAILPSQVRQIGIRS 180

Query: 181 VDEGEKRLVREARVSIFDMRQIDESGMKRVMEEALEGVDADTHLHVSFDVDFLDPAIAPG 240
           VD  EKRL++  RV ++DMR IDE+GMKR ME AL+G+ A+THLHVSFDVDFLDP+IAPG
Sbjct: 181 VDPEEKRLIKTHRVDVYDMRYIDEAGMKRTMEAALDGITANTHLHVSFDVDFLDPSIAPG 240

Query: 241 VGTTVRGGPNYREAQLCMEMIADTGRLASLDIVELNPAFDKRNQTAKLAVDLVESLFGKS 300
           VGTTV GG NYREAQL MEMIAD+GR+ SLDIVELNP  D  N TAKLAVDLVESLFGKS
Sbjct: 241 VGTTVPGGVNYREAQLVMEMIADSGRMGSLDIVELNPLLDDHNATAKLAVDLVESLFGKS 300

Query: 301 TLIR 304
           TL+R
Sbjct: 301 TLMR 304


Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 394
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 305
Length adjustment: 27
Effective length of query: 277
Effective length of database: 278
Effective search space:    77006
Effective search space used:    77006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_057507546.1 ABB28_RS04805 (arginase)
to HMM TIGR01229 (rocF: arginase (EC 3.5.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.20563.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20563.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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