Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_057507948.1 ABB28_RS06945 methionine synthase
Query= CharProtDB::CH_090726 (1227 letters) >NCBI__GCF_001431535.1:WP_057507948.1 Length = 894 Score = 1119 bits (2894), Expect = 0.0 Identities = 558/893 (62%), Positives = 692/893 (77%), Gaps = 12/893 (1%) Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400 RLSGLEPL I D LF+N+GERTNVTGSA+F++L+KEE+Y EA+DVARQQV +GAQI+D+ Sbjct: 8 RLSGLEPLVITPDLLFINIGERTNVTGSAQFRKLVKEERYEEAVDVARQQVASGAQILDV 67 Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460 NMDEG++D+EAAM R+LNLI EPDIAR+P+M+DSSKW VIE GLKC+QGK +VNSIS+K Sbjct: 68 NMDEGLIDSEAAMTRYLNLIMSEPDIARIPVMVDSSKWSVIEAGLKCLQGKSVVNSISLK 127 Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520 EG D F HA+ + RYGAA VVMAFDE GQADT ARK+EIC RAY+IL +E+GFPP+DII Sbjct: 128 EGEDLFREHARKVLRYGAAAVVMAFDEAGQADTCARKVEICTRAYRILVDEIGFPPQDII 187 Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580 FDPNIFAVATGIEEH+NYA DFI A IKR LPH +SGGVSNVSFSFRGN+ VR+AIH Sbjct: 188 FDPNIFAVATGIEEHDNYAVDFIEATRIIKRTLPHCHVSGGVSNVSFSFRGNETVRQAIH 247 Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640 +VFLY+AI GMDMGIVNAG + IYDDL AELR+ VEDVILNRR DGTERLLE+AE+Y+G Sbjct: 248 SVFLYHAIAAGMDMGIVNAGAMPIYDDLDAELRERVEDVILNRRADGTERLLEIAERYKG 307 Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDG 700 SK A + WR V RL ++LV G+ ++EQDTEEARQ +TRP++VIEGPLM+G Sbjct: 308 SK--GAARVEDLAWREKPVTDRLAHALVHGLDAWVEQDTEEARQASTRPLDVIEGPLMNG 365 Query: 701 MNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK----EQGKTNGKMVIATVKG 756 MNVVGDLFG GKMFLPQVVKSARVMK+AVAYL P+IEA K + ++NGK+++ATVKG Sbjct: 366 MNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPYIEAEKLRSGDTARSNGKIIMATVKG 425 Query: 757 DVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVN 816 DVHDIGKNIVGVVL CNN+E++DLGVMVPA+KIL A+ NAD+IGLSGLITPSL+EM + Sbjct: 426 DVHDIGKNIVGVVLACNNFEVIDLGVMVPAQKILDAARAENADIIGLSGLITPSLEEMSH 485 Query: 817 VAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQR 876 VA+EM+RQGF +PL+IGGATTS+AHTA+KI+ +Y PTV+V++ASR VGV +L+S R Sbjct: 486 VAREMQRQGFELPLMIGGATTSRAHTALKIDPHYKAPTVWVKDASRAVGVAQSLISHDLR 545 Query: 877 DDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEV-E 935 FVA +Y +R++H + V+L AR F W Y PP ++ G+ + Sbjct: 546 AAFVAANEADYADIRLRHRNRGDAKRLVSLAHARGQRFDGGWADYVPPAPNQPGLHVFDD 605 Query: 936 ASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNP 995 + L +YIDWTPFF W LAGKYP IL DE+VG +A L++DA MLD++ E+ L Sbjct: 606 YPLAELVDYIDWTPFFQAWELAGKYPAILTDEIVGSQASELYRDARQMLDRIVKERWLQA 665 Query: 996 RGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEKTG-FANYCLADFVAPKLSGK 1054 R V GL+PAN VGDD+ + + + H LRQQ +K ++CLADF+AP SG+ Sbjct: 666 RAVFGLWPANSVGDDVRVQHPDGEATL----HFLRQQVDKPAERPDFCLADFIAPADSGR 721 Query: 1055 ADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGY 1114 D+IGAFAVT G+ DA FEA HDDYN I++KALADR AEA AE LH+RVRK +WG+ Sbjct: 722 QDWIGAFAVTAGIGIDAHVARFEAAHDDYNAILLKALADRFAEALAERLHQRVRKEFWGH 781 Query: 1115 APNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPG 1174 A +E L N+ LI E Y GIRPAPGYPACPEH+EK T++ LL+ + + GM+LTESFAM P Sbjct: 782 ANDETLDNDALIAEKYSGIRPAPGYPACPEHSEKDTLFRLLDAQGNAGMQLTESFAMLPT 841 Query: 1175 ASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYDAD 1227 A+VSG+YFSHP S+Y+ V ++ R+QV DYA+RKG+ + ERWLA NL YD + Sbjct: 842 AAVSGYYFSHPQSQYFVVGRVSREQVTDYAKRKGVDRVQAERWLASNLDYDPE 894 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2638 Number of extensions: 114 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 894 Length adjustment: 45 Effective length of query: 1182 Effective length of database: 849 Effective search space: 1003518 Effective search space used: 1003518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_057507947.1 ABB28_RS06940 homocysteine S-methyltransferase family protein
Query= CharProtDB::CH_090726 (1227 letters) >NCBI__GCF_001431535.1:WP_057507947.1 Length = 368 Score = 411 bits (1056), Expect = e-119 Identities = 204/347 (58%), Positives = 253/347 (72%), Gaps = 20/347 (5%) Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD--------------------WPC 47 L + L ERIL++DG MGTMIQ + L E D+RGERF Sbjct: 15 LLSALRERILIIDGAMGTMIQRHGLQEDDYRGERFIGGVDTRAAGHVHGAGCDHGPVQEQ 74 Query: 48 DLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAA 107 DLKGNNDLL+L++PE+IA IH Y +AGAD++ETNTFN+T+++ ADY +E L E+N A Sbjct: 75 DLKGNNDLLLLTRPEIIAGIHTEYLQAGADLVETNTFNATSVSQADYHLEHLVYELNKAG 134 Query: 108 AKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYREST 167 A +ARAC D A TP+KPR+V GVLGPT+RTASISPDVNDP FRN +FD L YRE+ Sbjct: 135 AAVARACCDAMEATTPDKPRFVIGVLGPTSRTASISPDVNDPGFRNTSFDELRGTYREAI 194 Query: 168 KALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQT 227 L++GGAD +++ET+FDTLNAKAA+FAV+ F+A G LP+MISGTITDASGRTLSGQT Sbjct: 195 DGLIDGGADTLMVETIFDTLNAKAALFAVEEAFDARGARLPVMISGTITDASGRTLSGQT 254 Query: 228 TEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLD 287 EAF+ SL HA L+ GLNCALG D +R +V+ LS++A CYV+AHPNAGLPNAFGEYD Sbjct: 255 AEAFHASLAHARPLSIGLNCALGADAMRPHVETLSQVAGCYVSAHPNAGLPNAFGEYDET 314 Query: 288 ADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP 334 + MA + +A G LN+VGGCCG+TP HI A++ AV GL PR LP Sbjct: 315 PEEMAATLHGFATDGLLNLVGGCCGSTPAHIRAIAEAVAGLPPRALP 361 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1109 Number of extensions: 44 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 368 Length adjustment: 38 Effective length of query: 1189 Effective length of database: 330 Effective search space: 392370 Effective search space used: 392370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate WP_057507948.1 ABB28_RS06945 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.10200.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10200.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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