Alignments for a candidate for glk in Stenotrophomonas chelatiphaga DSM 21508

Align glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) (characterized)
to candidate WP_057508150.1 ABB28_RS08110 glucokinase

Query= ecocyc::GLUCOKIN-MONOMER
         (321 letters)



>NCBI__GCF_001431535.1:WP_057508150.1
          Length = 335

 Score =  242 bits (617), Expect = 1e-68
 Identities = 140/315 (44%), Positives = 178/315 (56%), Gaps = 9/315 (2%)

Query: 6   LVGDVGGTNARLALCDIASGEI---SQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIA 62
           LV D+GGTNAR AL D A          + +  +D+PSL    R YL+E   E   G  A
Sbjct: 9   LVADIGGTNARFALADTADSSPLLEDSIREFPVVDFPSLGDAARHYLQEVDAEASRGVFA 68

Query: 63  IACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGA 122
           +A  + GD   +TNH W  S +     LGFS L +INDF A +MAI +L+ + ++Q GGA
Sbjct: 69  VAGRVDGDEARITNHPWVISRSRTAAMLGFSELHLINDFAAQAMAISLLQPKDVVQIGGA 128

Query: 123 E---PVEGKPI--AVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEIL 177
                  G P    V G GTGLGV  LV    R   L  EGGHV F P + EE  ILEIL
Sbjct: 129 SWSPRRSGAPANYGVIGPGTGLGVGGLVIRHDRCFPLETEGGHVSFPPGTPEEIRILEIL 188

Query: 178 RAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLF 237
               G VS ER++ GPGLVN++RA+ +     P +LKP D+T RA A       RA+ LF
Sbjct: 189 SETFGRVSNERLICGPGLVNIHRAVCEMAGFDPGHLKPADVTARAGAGD-PQAMRAVDLF 247

Query: 238 CVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVY 297
           C I G   G+L L  G + GVF+ GG+VPR LE  + SGFR  FE KGRF   +  +P  
Sbjct: 248 CAIFGAIAGDLVLIQGAWDGVFLTGGLVPRMLESLQHSGFRQRFEHKGRFSSIMGRVPSL 307

Query: 298 LIVHDNPGLLGSGAH 312
            ++H NPGLLG+ A+
Sbjct: 308 AVIHPNPGLLGAAAY 322


Lambda     K      H
   0.322    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 335
Length adjustment: 28
Effective length of query: 293
Effective length of database: 307
Effective search space:    89951
Effective search space used:    89951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_057508150.1 ABB28_RS08110 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.29837.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29837.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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