Alignments for a candidate for tpi in Stenotrophomonas chelatiphaga DSM 21508

Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate WP_057508448.1 ABB28_RS09765 triose-phosphate isomerase

Query= BRENDA::P0A858
         (255 letters)



>NCBI__GCF_001431535.1:WP_057508448.1
          Length = 251

 Score =  254 bits (650), Expect = 9e-73
 Identities = 133/251 (52%), Positives = 167/251 (66%), Gaps = 1/251 (0%)

Query: 1   MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60
           MR  +V GNWKL+G+R     LV+++    A   G  + I PP  Y+     +   + + 
Sbjct: 1   MRRKIVAGNWKLHGTREFATTLVTDIANG-APEQGVELVILPPLPYLGELADDFADTAVS 59

Query: 61  LGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120
            GAQ+V  N  GA+TGE SA+ML ++GA+Y ++GHSERR YH ES EL+A+KFA     G
Sbjct: 60  FGAQDVSSNEKGAYTGEVSASMLHEVGARYGLVGHSERRQYHHESSELVARKFAAALHAG 119

Query: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180
           L PVLC+GET  + EAG+TE V A Q+  VL   G   FE AV+AYEPVWAIGTG++A+ 
Sbjct: 120 LVPVLCVGETLEQREAGQTEAVIASQLAPVLALVGGQGFENAVVAYEPVWAIGTGRTASK 179

Query: 181 AQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240
            QAQ VH FIR  +AKVDA IA+ + I YGGSV   NAAELFAQPD+DG LVGGASL A 
Sbjct: 180 EQAQQVHAFIRGEVAKVDARIADSLTILYGGSVKPDNAAELFAQPDVDGGLVGGASLVAA 239

Query: 241 AFAVIVKAAEA 251
            F  I +AA A
Sbjct: 240 DFLAIAQAAAA 250


Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 198
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 251
Length adjustment: 24
Effective length of query: 231
Effective length of database: 227
Effective search space:    52437
Effective search space used:    52437
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)

Align candidate WP_057508448.1 ABB28_RS09765 (triose-phosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.2391.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2391.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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