Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate WP_057508448.1 ABB28_RS09765 triose-phosphate isomerase
Query= BRENDA::P0A858 (255 letters) >NCBI__GCF_001431535.1:WP_057508448.1 Length = 251 Score = 254 bits (650), Expect = 9e-73 Identities = 133/251 (52%), Positives = 167/251 (66%), Gaps = 1/251 (0%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60 MR +V GNWKL+G+R LV+++ A G + I PP Y+ + + + Sbjct: 1 MRRKIVAGNWKLHGTREFATTLVTDIANG-APEQGVELVILPPLPYLGELADDFADTAVS 59 Query: 61 LGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120 GAQ+V N GA+TGE SA+ML ++GA+Y ++GHSERR YH ES EL+A+KFA G Sbjct: 60 FGAQDVSSNEKGAYTGEVSASMLHEVGARYGLVGHSERRQYHHESSELVARKFAAALHAG 119 Query: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180 L PVLC+GET + EAG+TE V A Q+ VL G FE AV+AYEPVWAIGTG++A+ Sbjct: 120 LVPVLCVGETLEQREAGQTEAVIASQLAPVLALVGGQGFENAVVAYEPVWAIGTGRTASK 179 Query: 181 AQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240 QAQ VH FIR +AKVDA IA+ + I YGGSV NAAELFAQPD+DG LVGGASL A Sbjct: 180 EQAQQVHAFIRGEVAKVDARIADSLTILYGGSVKPDNAAELFAQPDVDGGLVGGASLVAA 239 Query: 241 AFAVIVKAAEA 251 F I +AA A Sbjct: 240 DFLAIAQAAAA 250 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 198 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 251 Length adjustment: 24 Effective length of query: 231 Effective length of database: 227 Effective search space: 52437 Effective search space used: 52437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate WP_057508448.1 ABB28_RS09765 (triose-phosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.32013.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32013.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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