Alignments for a candidate for pcaB in Stenotrophomonas chelatiphaga DSM 21508

Align 3-carboxy-cis,cis-muconate cycloisomerase; EC 5.5.1.2 (characterized, see rationale)
to candidate WP_057508463.1 ABB28_RS09870 3-carboxy-cis,cis-muconate cycloisomerase

Query= uniprot:A0A0C4YE08
         (470 letters)



>NCBI__GCF_001431535.1:WP_057508463.1
          Length = 451

 Score =  427 bits (1099), Expect = e-124
 Identities = 240/455 (52%), Positives = 294/455 (64%), Gaps = 4/455 (0%)

Query: 1   MPTSSRLTDPMFGSAATLAAFSDTATVQRMLDFEAALARAEASCGVIPADAAEAIAATCR 60
           M  +  L   +FG     A F+D A +Q MLD E ALA A+A CGVIP  A  AI A C 
Sbjct: 1   MSETHSLLGALFGDPLVDAGFTDAARLQAMLDVERALACAQARCGVIPQTALPAIEAACH 60

Query: 61  AGEIDFDALAAAAVAGGNLAIPLVRQLTARVAARDAQAARYVHWGATSQDAIDTGMVLQL 120
           A   D  ALA A    GN AIPLV+ LTARV A DA+AAR+VHWGATSQD IDTG VLQL
Sbjct: 61  AQLYDIAALAQATALAGNPAIPLVKALTARVRADDAEAARWVHWGATSQDIIDTGAVLQL 120

Query: 121 REALQAVDADLKALGHACAALAAQHRDTPMVARTWLQHALPTTFGLKAAGWLDALRRDLR 180
           R+A+  V A L+ L  A AALA   RDT +  RT LQ A+P TFGLKAAGWLDAL+R  +
Sbjct: 121 RQAVGQVQAKLQQLCSALAALAEAERDTGLPGRTLLQQAVPVTFGLKAAGWLDALQRSQQ 180

Query: 181 RLDAARAQAATLQFGGAAGTLASLGAAAPAVATALGSALSLAVAPTPWHAYRDRMVEVAT 240
           RL A  A    LQFGGAAGTLASL      VA AL   L L +   PWHA RDR+ E+ +
Sbjct: 181 RLHALHADTLVLQFGGAAGTLASLQDRGLDVAQALAEELQLPLPALPWHAARDRIAELGS 240

Query: 241 TLGMLTGSLGKIARDVSLMMQTEVAEVAEPTGPGRGGSSTMPHKRNPVGCAAVLTAAVRV 300
              +L GSLGKIA D+ L+MQ+EVAE  EP G G+GGSS MPHKRNPVGC A + AA RV
Sbjct: 241 VFALLVGSLGKIATDIVLLMQSEVAEAFEPAGEGKGGSSAMPHKRNPVGCVAAIAAATRV 300

Query: 301 PPLVATMLAGMVQEHERALGGWQAEWDTLPQIVTLAAGALRQMLEVVGGLQVDAARMRAN 360
           P L++T+ + M Q HERA G W AEW+T+P+IV L AG+L Q+  VV GLQ+D  RM+ +
Sbjct: 301 PGLLSTLFSAMPQAHERAAGQWHAEWETVPEIVRLCAGSLAQVTVVVRGLQLDRERMQEH 360

Query: 361 LGVTHGLILAEAAMLELGGKIGRLPAHHLVEGACRRAVAEGTTLRQALGATLAEDAAHAG 420
           LG   GL+ AEA  + L  +IG+  AH LVE A ++A+A    LR+ L A   E + H  
Sbjct: 361 LGSHGGLLYAEAVAVTLAEQIGKAAAHALVEQAAQQALAHARPLREVLQAN-PEVSRH-- 417

Query: 421 LMDAAALDRVCDPANYAGQAAGFVDAVLAAWRHEA 455
            +D+A LD +    ++ G A  ++D VLA   H+A
Sbjct: 418 -LDSAQLDALFAADSWRGMADTWIDRVLARVPHDA 451


Lambda     K      H
   0.319    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 461
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 451
Length adjustment: 33
Effective length of query: 437
Effective length of database: 418
Effective search space:   182666
Effective search space used:   182666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_057508463.1 ABB28_RS09870 (3-carboxy-cis,cis-muconate cycloisomerase)
to HMM TIGR02426 (pcaB: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.2697.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.