Alignments for a candidate for pcaF in Stenotrophomonas chelatiphaga DSM 21508

Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate WP_057508480.1 ABB28_RS09885 3-oxoadipyl-CoA thiolase

Query= metacyc::MONOMER-3207
         (400 letters)



>NCBI__GCF_001431535.1:WP_057508480.1
          Length = 402

 Score =  537 bits (1383), Expect = e-157
 Identities = 272/402 (67%), Positives = 330/402 (82%), Gaps = 2/402 (0%)

Query: 1   MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQA 60
           M D +I D IRTPIGR+ GALAGVRADDL A+PL+AL+  +P +    ++EV+ GC NQA
Sbjct: 1   MHDTYIIDGIRTPIGRYAGALAGVRADDLGAIPLQALLARHPGLDPALIEEVYLGCTNQA 60

Query: 61  GEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM 120
           GEDNRNVARM+LLLAGLP ++PG T+NRLC SG+DAIGT  R IA+GE+ LAIAGGVESM
Sbjct: 61  GEDNRNVARMSLLLAGLPVTVPGSTVNRLCGSGLDAIGTVARGIAAGELGLAIAGGVESM 120

Query: 121 SRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRAD 180
           SRAP VMGKA + ++R+  LEDTT+GWRFINP ++  +GV++M +TA+NVA+ + +SR D
Sbjct: 121 SRAPMVMGKAGTPFARDQVLEDTTMGWRFINPRLRELHGVETMGQTAENVAERHAISRED 180

Query: 181 QDAFALRSQQKAAAAQAAGFFAEEIVPVRI-AHKKGETI-VERDEHLRPETTLEALTKLK 238
           QD FALRSQQ+AAAAQ AGFF  EI+ V +   ++GET+ VE DEH R +TTLEAL +LK
Sbjct: 181 QDRFALRSQQRAAAAQQAGFFDGEIIAVDVPGRRRGETVRVEHDEHPRADTTLEALARLK 240

Query: 239 PVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGP 298
           P+     +VTAGNASG+NDGAAAL+LASA  V+  GLTPRAR+LG AS GV P VMG+GP
Sbjct: 241 PLFRQPGSVTAGNASGINDGAAALLLASAAQVQALGLTPRARILGFASAGVEPSVMGMGP 300

Query: 299 VPAVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPL 358
           VPA R+L  RLG++++DFD IELNEAFASQGLA LRELG+ADDAP VN NGGAIALGHPL
Sbjct: 301 VPATRRLLARLGLSIADFDAIELNEAFASQGLACLRELGLADDAPHVNANGGAIALGHPL 360

Query: 359 GMSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV 400
           GMSGAR+ LT + QLE SGGR+GLATMC+GVGQG+ALAIERV
Sbjct: 361 GMSGARIALTLMRQLEASGGRRGLATMCIGVGQGVALAIERV 402


Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 551
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 402
Length adjustment: 31
Effective length of query: 369
Effective length of database: 371
Effective search space:   136899
Effective search space used:   136899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_057508480.1 ABB28_RS09885 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))

Software error:

../bin/blast/fastacmd -i /tmp/list.19142.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19142.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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