Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_057508546.1 ABB28_RS10335 dihydroxy-acid dehydratase
Query= SwissProt::P55186 (617 letters) >NCBI__GCF_001431535.1:WP_057508546.1 Length = 611 Score = 903 bits (2333), Expect = 0.0 Identities = 459/616 (74%), Positives = 507/616 (82%), Gaps = 6/616 (0%) Query: 1 MPPYRSRTTTHGRNMAGARGLWRATGMKDEDFGKPIIAVANSFTQFVPGHVHLKDLGQLV 60 MP YRSRT+T GRNMAGAR LWRATGMKD DF KPIIA+ANSFTQFVPGHVHLKDLGQLV Sbjct: 1 MPEYRSRTSTAGRNMAGARALWRATGMKDGDFHKPIIAIANSFTQFVPGHVHLKDLGQLV 60 Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAIVCIS 120 AREIE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADAIVCIS Sbjct: 61 AREIEQAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS 120 Query: 121 NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDEE 180 NCDKITPGMLMAA+RL+IPV+FVSGGPMEAGK + LDLVDAMV+AADDS SDE+ Sbjct: 121 NCDKITPGMLMAALRLDIPVIFVSGGPMEAGKTKLSE--HKLDLVDAMVIAADDSASDEK 178 Query: 181 VEAIEKAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADREALFKEAGRVVV 240 V E++ACPTCGSCSGMFTANSMNCLTEALGLSLPGNG+ LATHADRE LF+ AGRV+V Sbjct: 179 VAEYERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGTTLATHADREMLFRRAGRVIV 238 Query: 241 DLCQRWYEQEDATALPRGIATRAAFENAMSLDIAMGGSTNTVLHLLAAAHEGGIDFSMAD 300 +LC RWY ED ALP GIAT AAF NAM+LDIAMGGSTNT+LHLLAAA EGG+DF + Sbjct: 239 ELCHRWYGGEDPRALPSGIATAAAFGNAMTLDIAMGGSTNTILHLLAAAQEGGVDFDLTH 298 Query: 301 IDRLSRHVPCLSKVAPAKSDVHMEDVHRAGGVMAILGELERGGLIDASQPTVHAPTMGEA 360 ID LSR VP L KVAP H+EDVHRAGGV ILGEL+R GL+D S PTVH+P++ +A Sbjct: 299 IDALSRRVPQLCKVAPNTPQYHIEDVHRAGGVFGILGELDRAGLLDTSVPTVHSPSLADA 358 Query: 361 LARWDIGRTNSQIAHEFFKAAPGGKPTQVAFSQAARWEELDLDRENGVIRSVEHPFSKDG 420 L RWD T+ HEFF A P G PTQVAFSQA RW LDLDR G IRS++H +S +G Sbjct: 359 LKRWDATLTDDAKVHEFFAAGPAGIPTQVAFSQATRWPSLDLDRAEGCIRSLQHAYSLEG 418 Query: 421 GLAVLFGNLAPEGCIVKTAGVDESILTFRGTARVFESQDAAVSGILGGQVKAGEVVVIRY 480 GLAVL GNLA +GC+VKTAGVDESI F G ARVFESQDAAV+GIL QVK G+VVVIRY Sbjct: 419 GLAVLRGNLAVDGCVVKTAGVDESIHVFEGNARVFESQDAAVAGILADQVKPGDVVVIRY 478 Query: 481 EGPKGGPGMQEMLYPTTYLKSKGLGAACALVTDGRFSGGTSGLSIGHVSPEAGEGGLIAL 540 EGPKGGPGMQEMLYPT+YLKSKGLG CAL+TDGRFSGGTSGLSIGHVSPEA GG+I L Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKQCALLTDGRFSGGTSGLSIGHVSPEAASGGVIGL 538 Query: 541 VETGDPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPLN-RKRDLTPALRAYAAM 599 V GD I IDIP RGITL V DA LA RR A ARG W PL R R +T AL+AYA + Sbjct: 539 VHDGDRIRIDIPARGITLLVDDATLAERRAAADARG---WKPLEARPRKVTSALKAYALL 595 Query: 600 TTNAARGAVRDVSQIE 615 T+A +GAVR+ + ++ Sbjct: 596 ATSADKGAVRNTALLD 611 Lambda K H 0.318 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1255 Number of extensions: 42 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 617 Length of database: 611 Length adjustment: 37 Effective length of query: 580 Effective length of database: 574 Effective search space: 332920 Effective search space used: 332920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate WP_057508546.1 ABB28_RS10335 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.14639.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14639.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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