Alignments for a candidate for sdaB in Stenotrophomonas chelatiphaga DSM 21508

Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate WP_057508715.1 ABB28_RS11230 L-serine ammonia-lyase

Query= reanno::pseudo6_N2E2:Pf6N2E2_5557
         (458 letters)



>NCBI__GCF_001431535.1:WP_057508715.1
          Length = 460

 Score =  612 bits (1578), Expect = e-180
 Identities = 307/460 (66%), Positives = 363/460 (78%), Gaps = 2/460 (0%)

Query: 1   MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRRDD-LLNCTTSVKVELYGSLGATGK 59
           M++S FD+FKIGIGPSSSHTVGPM+AA RF      D   L     ++ ++YGSL  TG+
Sbjct: 1   MAVSTFDVFKIGIGPSSSHTVGPMKAAERFVHRWLLDPGRLQDVVRIRADVYGSLALTGR 60

Query: 60  GHGSDKAVLLGLEGEHPDTVDTETVDARLQAIRSSGRLNLLGEHSIEFNEKLHLAMI-RK 118
           GHG+DKAVLLGLEG+ P+ +D + + A L+ IR+S R+NL+G+H I F+EK  L +  R+
Sbjct: 61  GHGTDKAVLLGLEGQRPNLIDPDIIPATLERIRASKRINLMGQHEISFDEKRDLGLNKRQ 120

Query: 119 PLAFHPNGMIFRAFDAAGLQVRSREYYSVGGGFVVDEGAAGADRIVEDATPLTFPFKSAK 178
            L +H NGM F A+ A    + +R+YYSVGGGFVV++  A  DRIV D TPL +PFKS  
Sbjct: 121 KLPYHTNGMRFTAYGANDELIATRDYYSVGGGFVVNQDDAADDRIVPDETPLPYPFKSGD 180

Query: 179 DLLGHCSTYGLSISQVMLTNESAWRPEAETRAGLLKIWQVMQDCVAAGCRNEGILPGGLK 238
           +LL   +  GLSI+Q+M  NE +WR E + RA L +IW+ MQ CVA G R EG+LPGGLK
Sbjct: 181 ELLAQTARSGLSIAQLMFENEKSWRSEDDIRAQLREIWEAMQACVARGIRQEGVLPGGLK 240

Query: 239 VKRRAAALHRQLCKNPEAALRDPLSVLDWVNLYALAVNEENAYGGRVVTAPTNGAAGIIP 298
           V RRA ALHR+L   PEAA+RDPL+ LDWVNLYALAVNEENA GGRVVTAPTNGAAG++P
Sbjct: 241 VGRRAPALHRELSSKPEAAMRDPLTTLDWVNLYALAVNEENAAGGRVVTAPTNGAAGVLP 300

Query: 299 AVLHYYMRFIPGASEDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGAL 358
           AVLHY+ RF PGA+E  +  FLLT+AAIGILYKENASISGAEVGCQGEVGVACSMAAG L
Sbjct: 301 AVLHYFDRFCPGANEQRIFDFLLTSAAIGILYKENASISGAEVGCQGEVGVACSMAAGGL 360

Query: 359 CEVLGGSVQQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMAMRGD 418
              LGGS  Q+ENAAEIGMEHNLGLTCDPIGGLVQ+PCIERNAMG+VKAINA RMAMRGD
Sbjct: 361 VAALGGSPSQIENAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGAVKAINASRMAMRGD 420

Query: 419 GHHFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC 458
           G H VSLDKVI+TMR TG DM+ KYKET+RGGLAVN+IEC
Sbjct: 421 GKHKVSLDKVIKTMRDTGRDMQDKYKETSRGGLAVNVIEC 460


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 697
Number of extensions: 30
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 460
Length adjustment: 33
Effective length of query: 425
Effective length of database: 427
Effective search space:   181475
Effective search space used:   181475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_057508715.1 ABB28_RS11230 (L-serine ammonia-lyase)
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.5670.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5670.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.