Align Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate WP_057508738.1 ABB28_RS11325 Fe/S-dependent 2-methylisocitrate dehydratase AcnD
Query= SwissProt::Q937N8
(869 letters)
>NCBI__GCF_001431535.1:WP_057508738.1
Length = 871
Score = 1427 bits (3695), Expect = 0.0
Identities = 712/869 (81%), Positives = 777/869 (89%), Gaps = 3/869 (0%)
Query: 1 MNSANRKPLPGTKLDYFDARAAVEAIQPGAYDKLPYTSRVLAENLVRRCDPATLTDSLLQ 60
MN + RK LPGT LDYFD RAAV+AIQPGAY LPYTSRVLAENLVRRCDPATL SL Q
Sbjct: 1 MNESYRKNLPGTALDYFDTRAAVDAIQPGAYATLPYTSRVLAENLVRRCDPATLQASLRQ 60
Query: 61 LVGRKRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADQGGDPAKVNPVVPVQLIVDH 120
L+ R++DLDFPWFPARVVCHDILGQTALVDLAGLRDAIAD GGDPA++NPVVP QLIVDH
Sbjct: 61 LIERRQDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADAGGDPAQINPVVPTQLIVDH 120
Query: 121 SLAVECGGFDPDAFAKNRAIEDRRNEDRFHFIDWTKQAFKNVDVIPPGNGIMHQINLEKM 180
SLAVE GFD AF +NRA+EDRRNEDRFHFI+WT++AFKNVDVIPPGNGIMHQINLEKM
Sbjct: 121 SLAVEYPGFDKAAFERNRAVEDRRNEDRFHFINWTRKAFKNVDVIPPGNGIMHQINLEKM 180
Query: 181 SPVIHADNGVAYPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGV 240
SPV+ +GVA+PDTCVGTDSHTPHVDALGVIAIGVGGLEAE+VMLGRASWMRLPDI+GV
Sbjct: 181 SPVVQVRDGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAESVMLGRASWMRLPDIIGV 240
Query: 241 ELTGKRQPGITATDIVLALTEFLRKEKVVGAYLEFRGEGASSLTLGDRATISNMAPEYGA 300
ELTG+ QPGIT TDIVLALTEFLR KVVGA++EF G GAS+L++GDRATISNM PE+GA
Sbjct: 241 ELTGRPQPGITCTDIVLALTEFLRAAKVVGAWIEFFGAGASALSIGDRATISNMTPEFGA 300
Query: 301 TAAMFFIDEQTIDYLRLTGRTDEQLKLVETYARTAGLWADSLKNAEYERVLKFDLSSVVR 360
TAAMF ID+QT+DYLRLTGR + Q++LVETYA+ AGLWAD L +YERVL+FDLSSVVR
Sbjct: 301 TAAMFSIDQQTLDYLRLTGREEPQVQLVETYAKAAGLWADDLAQVQYERVLQFDLSSVVR 360
Query: 361 NMAGPSNPHKRLPTSALAERGIAVDLDKASA--QEAEGLMPDGAVIIAAITSCTNTSNPR 418
NMAGPSNPHKR+ TS LA RGIA + AS ++A GLMPDGAVIIAAITSCTNTSNPR
Sbjct: 361 NMAGPSNPHKRVATSELAARGIADEAKLASGKLEQAGGLMPDGAVIIAAITSCTNTSNPR 420
Query: 419 NVIAAALLARNANARGLARKPWVKSSLAPGSKAVELYLEEANLLPDLEKLGFGIVAFACT 478
NVI AALLARNAN GL RKPWVKSSLAPGSKAV+LYLEEA LL +LE+LGFGIV FACT
Sbjct: 421 NVIGAALLARNANRAGLTRKPWVKSSLAPGSKAVQLYLEEAGLLGELEQLGFGIVGFACT 480
Query: 479 TCNGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAG 538
TCNGMSGALDP IQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASP LVVAYAIAG
Sbjct: 481 TCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPALVVAYAIAG 540
Query: 539 TIRFDIEKDVLGTDQDGKPVYLKDIWPSDEEIDAIVAKSVKPEQFRKVYEPMFAITAASG 598
T+RFDIEKD LG D G + LKD+WPSDEEIDA+V SVKPEQFRKVY+PMF T G
Sbjct: 541 TVRFDIEKDALGVDAQGNSITLKDLWPSDEEIDAVVKASVKPEQFRKVYDPMFTFTVEHG 600
Query: 599 ESVSPLYDWRPQSTYIRRPPYWEGALAGERTLKALRPLAVLGDNITTDHLSPSNAIMLNS 658
+SPLY WRPQSTYIRRPPYWEGALAG RTL +RPLAVLGDNITTDHLSPSNAI+ +S
Sbjct: 601 APISPLYAWRPQSTYIRRPPYWEGALAGARTLSGMRPLAVLGDNITTDHLSPSNAILASS 660
Query: 659 AAGEYLARMGLPEEDFNSYATHRGDHLTAQRATFANPTLINEMAVVDGQVKKGSLARIEP 718
AAGEYLA+MGLPEEDFNSYATHRGDHLTAQRATFANP LINEMAVVDG VK+GSLAR+EP
Sbjct: 661 AAGEYLAQMGLPEEDFNSYATHRGDHLTAQRATFANPKLINEMAVVDGVVKQGSLARVEP 720
Query: 719 EGKVVRMWEAIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEVIVAEGFERIHR 778
EG+V+RMWEAIETYM R+QPLIIIAGADYGQGSSRDWAAKGVRLAGVE I AEGFERIHR
Sbjct: 721 EGQVLRMWEAIETYMLRRQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIAAEGFERIHR 780
Query: 779 TNLIGMGVLPLEFKPGVNRLTLGLDGTETYDVIGERQPRATLTLVVNRKNGERVEVPVTC 838
TNLIGMGVLPLEFKPGV RLTLG+DGTET+DV G R PRA LTLV++R++G ++ VPVTC
Sbjct: 781 TNLIGMGVLPLEFKPGVTRLTLGIDGTETFDVTGARLPRAELTLVIHRRDGSQLMVPVTC 840
Query: 839 RLDSDEEVSIYEAGGVL-HFAQDFLESSR 866
RLD+ EEVSIYEAGGVL FAQDFLE+S+
Sbjct: 841 RLDTAEEVSIYEAGGVLQRFAQDFLEASQ 869
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2163
Number of extensions: 76
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 869
Length of database: 871
Length adjustment: 42
Effective length of query: 827
Effective length of database: 829
Effective search space: 685583
Effective search space used: 685583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Align candidate WP_057508738.1 ABB28_RS11325 (Fe/S-dependent 2-methylisocitrate dehydratase AcnD)
to HMM TIGR02333 (acnD: 2-methylisocitrate dehydratase, Fe/S-dependent (EC 4.2.1.99))
../bin/blast/fastacmd -i /tmp/list.25462.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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