Alignments for a candidate for aroG in Stenotrophomonas chelatiphaga DSM 21508

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_057508934.1 ABB28_RS12420 3-deoxy-7-phosphoheptulonate synthase class II

Query= BRENDA::P29976
         (525 letters)



>NCBI__GCF_001431535.1:WP_057508934.1
          Length = 452

 Score =  429 bits (1102), Expect = e-124
 Identities = 213/439 (48%), Positives = 289/439 (65%), Gaps = 1/439 (0%)

Query: 75  WTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLL 134
           W+PESW+ K ALQ+P YP+   L++ L  ++  PP+V + E   L+++LADA  G+ FLL
Sbjct: 12  WSPESWRGKTALQMPSYPDPVALDAALHELKRLPPLVTSWEIVALKQQLADAQEGRRFLL 71

Query: 135 QGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEK 194
           QGGDCAE+F +  +  I +  +VLLQMS+VL  G + PVI+VGR AGQ+AKPRS   E +
Sbjct: 72  QGGDCAENFSDCESGMISNRLKVLLQMSLVLVHGLRKPVIRVGRFAGQYAKPRSADTETR 131

Query: 195 DGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQ 254
           DGV LPSY+GD IN   F E +R+PDP RM++A+  SA T+N +RA   GG+A +     
Sbjct: 132 DGVTLPSYRGDVINAPAFTEVARLPDPKRMLQAHAHSAMTMNFVRALIDGGFADLHHPEY 191

Query: 255 WNLDFVEQSEQADRYQELANRVDEALGFMSACGLGTDHPLMTTTDFYTSHECLLLPYEQS 314
           WNL++V  S  A  YQ++   +++++GFM        H L    DFYTSHE LLLPYEQ 
Sbjct: 192 WNLEWVRHSPLAVEYQKMVTSIEDSIGFMETISGSRVHNLKRV-DFYTSHEALLLPYEQG 250

Query: 315 LTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKLV 374
           LTR       + + S H  W G RT  LDGAHVE+LRG+ NP+ IKV   + P +L++L+
Sbjct: 251 LTRQVPRQQGWLNLSTHYPWIGMRTAALDGAHVEYLRGVRNPIAIKVGPSVRPDQLLRLI 310

Query: 375 EILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLK 434
           ++LNP+++PGR++ I RMGA  +  KLP L+ AV+R G+ V WVCD MHGNT     G K
Sbjct: 311 DVLNPDDEPGRLSFIHRMGAAQIADKLPPLLDAVKRDGRRVLWVCDAMHGNTESTENGYK 370

Query: 435 TRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHC 494
           TR FD+I  EV    D+H   G+  GG+HLEMTG++VTEC GG+R +T  DL   Y +  
Sbjct: 371 TRRFDNIRGEVELSFDLHAAAGTRLGGVHLEMTGEDVTECTGGARELTERDLERAYRSSV 430

Query: 495 DPRLNASQSLELAFIVAER 513
           DPRLN  QSLE+A  +  +
Sbjct: 431 DPRLNYEQSLEIAMAIVRK 449


Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 570
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 452
Length adjustment: 34
Effective length of query: 491
Effective length of database: 418
Effective search space:   205238
Effective search space used:   205238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_057508934.1 ABB28_RS12420 (3-deoxy-7-phosphoheptulonate synthase class II)
to HMM TIGR01358 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.7819.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7819.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.