Alignments for a candidate for HPD in Stenotrophomonas chelatiphaga DSM 21508

Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate WP_057509090.1 ABB28_RS13355 4-hydroxyphenylpyruvate dioxygenase

Query= BRENDA::Q09PG8
         (367 letters)



>NCBI__GCF_001431535.1:WP_057509090.1
          Length = 370

 Score =  525 bits (1352), Expect = e-154
 Identities = 258/370 (69%), Positives = 296/370 (80%), Gaps = 3/370 (0%)

Query: 1   MNASAQAQTSPAVA-PVATFENPMGIDGFEFVEFASP--EPEKLHELFRNLGFVQVARHK 57
           MN + Q  + P +   V TFENPMGIDGFEFVEFA+P    ++LH  FR++GF  V +H 
Sbjct: 1   MNTTVQTASHPNLGMQVTTFENPMGIDGFEFVEFAAPAGRGQELHAYFRSMGFSAVLKHA 60

Query: 58  TRPIYNYRQNDCTFLINEDPDSFAADFARVHGPSACGFAIRVNKLAEWVRVQALKNGAKS 117
           TRPI  YRQ    FL+NEDPDSFAADFA  HGP ACGFAIR  K    V   AL NGA+ 
Sbjct: 61  TRPITVYRQGGVNFLVNEDPDSFAADFAEKHGPCACGFAIRFQKPGAEVYQTALGNGAEP 120

Query: 118 IADKETSKAVAAPVIEGIGGCMLYIVDRYDDKGTIHDPDWEWLPGAQMMPKGFGLTFIDH 177
           +  K  S+AV APVI+GIG CMLY+VDRY D G+I+  D+  + GA   PKGFGLTFIDH
Sbjct: 121 VDFKPDSRAVDAPVIKGIGDCMLYLVDRYGDAGSIYGDDYVAVEGADPAPKGFGLTFIDH 180

Query: 178 LTHNVYFGNMSKWADYYERLFQFREIRYFDIKGAKTGLLSKAMTAPDGMVRIPLNESPDP 237
           LTHN+YFGNM +W+DYYERLF FREIRYFDIKG KTGL+SKAMTAPDG+VRIPLNES DP
Sbjct: 181 LTHNLYFGNMQQWSDYYERLFNFREIRYFDIKGLKTGLVSKAMTAPDGIVRIPLNESSDP 240

Query: 238 KSQINEYLDQYRGEGIQHIACFTDDIYATVEAMRAHGIEFLDTPNAYYAVIDERIPNHGE 297
           KSQINEYLD Y+GEGIQHIACFTDDIYATVEAMR  G++FLDTP+ Y+ VID+R+P HGE
Sbjct: 241 KSQINEYLDAYKGEGIQHIACFTDDIYATVEAMREQGVQFLDTPDTYFDVIDQRVPGHGE 300

Query: 298 DVARMKESRILIDADPETKKKLLLQIFTKNCVGPIFFEIIQRKGNTGFGEGNFQALFESI 357
           DVAR+  ++ILIDADPET ++ LLQIFT NC+GPIFFEIIQRKGN GFGEGNF ALFESI
Sbjct: 301 DVARLARNKILIDADPETHQRKLLQIFTLNCIGPIFFEIIQRKGNEGFGEGNFTALFESI 360

Query: 358 EREQMARGVL 367
           ER+QM RGVL
Sbjct: 361 ERDQMRRGVL 370


Lambda     K      H
   0.321    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 635
Number of extensions: 30
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 370
Length adjustment: 30
Effective length of query: 337
Effective length of database: 340
Effective search space:   114580
Effective search space used:   114580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_057509090.1 ABB28_RS13355 (4-hydroxyphenylpyruvate dioxygenase)
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.8319.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8319.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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