Alignments for a candidate for hmgA in Stenotrophomonas chelatiphaga DSM 21508

Align Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (characterized)
to candidate WP_057509091.1 ABB28_RS13360 homogentisate 1,2-dioxygenase

Query= reanno::Cup4G11:RR42_RS31275
         (449 letters)



>NCBI__GCF_001431535.1:WP_057509091.1
          Length = 432

 Score =  652 bits (1682), Expect = 0.0
 Identities = 305/423 (72%), Positives = 346/423 (81%)

Query: 22  GYQSGFANEFATEALPGALPVGQNSPQRAPYGLYAEQISGTAFTAPRAHNRRSWCYRIRA 81
           GYQ+GF NEFA+EA  GALP+GQN+PQ   +GLYAEQ+SGTAFTAPR  NRRSW YRIR 
Sbjct: 9   GYQTGFGNEFASEARAGALPIGQNAPQTVAHGLYAEQLSGTAFTAPRGSNRRSWLYRIRP 68

Query: 82  AAMHEPFTRVEQSRIVSHFDAVPPSPNQMRWSPPAMPKEPTDFVDGIITMAGNGGPEAMS 141
           A  H  FT   Q R+   F  +P SPNQ+RWSP  +P+ PTDF++G+ TM GNGGPEA +
Sbjct: 69  AVTHGEFTAFAQDRLQGSFHGLPASPNQLRWSPLPLPEAPTDFIEGLYTMGGNGGPEAHA 128

Query: 142 GCGIHLYLANRSMTDRFFYNADGEMLIVPQQGRLRLATEMGLLDVEPQEIVVIPRGVRFR 201
           G  IHLY ANR M  R+FYNADGE+LIVPQ GRLRL TEMG+++VEPQ+I VIPRGVRFR
Sbjct: 129 GVAIHLYAANRDMQGRYFYNADGELLIVPQLGRLRLLTEMGVVEVEPQQIAVIPRGVRFR 188

Query: 202 VELPDGEARGYICENYGALFRLPDLGVIGSNGLANPRDFLTPHAWYEDREGDFELVAKFQ 261
           VELPDG+ARGY+CEN+GAL +LPDLG IGSNGLANPRDF TP A +ED +G+FELVAKF+
Sbjct: 189 VELPDGQARGYVCENFGALLKLPDLGPIGSNGLANPRDFETPQAAFEDLDGEFELVAKFE 248

Query: 262 GNLWRAAIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQSPSDTPGV 321
           G LWRA I HSPLDVVAWHGNYAPY+YDLRRFNTIGSISFDHPDPSIFLVL SPSDT G 
Sbjct: 249 GQLWRARIDHSPLDVVAWHGNYAPYRYDLRRFNTIGSISFDHPDPSIFLVLHSPSDTAGT 308

Query: 322 DSIDFVIFGPRWLAMQNTFRPPWFHRNIASEFMGLIEGVYDAKADGFSPGGASLHNCMSG 381
            ++DF IF PRWL  Q+TFRPPWFHRNIASEFMGL+ G YDAKA+GF PGGASLHNCMSG
Sbjct: 309 SNMDFAIFPPRWLVAQHTFRPPWFHRNIASEFMGLVHGAYDAKAEGFVPGGASLHNCMSG 368

Query: 382 HGPDAETFAKATAADTSQPHRIGDTMAFMFETPAVIRPTPYAAESAQLQDDYYRCWQGLK 441
           HGPDA TF KA+AAD S+P  I DTMAFMFET  VIRPT  A  +A  Q DY +CW GL+
Sbjct: 369 HGPDAPTFDKASAADLSRPDVIKDTMAFMFETRGVIRPTAQALSAAHRQGDYQQCWNGLR 428

Query: 442 KHF 444
            +F
Sbjct: 429 NNF 431


Lambda     K      H
   0.320    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 794
Number of extensions: 25
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 432
Length adjustment: 32
Effective length of query: 417
Effective length of database: 400
Effective search space:   166800
Effective search space used:   166800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_057509091.1 ABB28_RS13360 (homogentisate 1,2-dioxygenase)
to HMM TIGR01015 (hmgA: homogentisate 1,2-dioxygenase (EC 1.13.11.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11712.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11712.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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