Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_057509125.1 ABB28_RS13565 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968 (1073 letters) >NCBI__GCF_001431535.1:WP_057509125.1 Length = 1080 Score = 1475 bits (3818), Expect = 0.0 Identities = 756/1079 (70%), Positives = 883/1079 (81%), Gaps = 8/1079 (0%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 M KRTD+K+ILI+GAGPIVIGQACEFDYSGAQACKALR+EGYRV+LVNSNPATIMTDPEM Sbjct: 1 MAKRTDLKTILIIGAGPIVIGQACEFDYSGAQACKALRDEGYRVVLVNSNPATIMTDPEM 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 ADA YIEPI+W+ V KII KE+PDA+LPTMGGQTALNCAL+L GVLE++ V +IGA Sbjct: 61 ADAVYIEPINWQTVEKIIAKEKPDALLPTMGGQTALNCALDLADNGVLEKYNVELIGAKR 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180 +AI AEDR F VAM +IGLE + +AHT+EEAL + VG+P IIRPSFT+GGSGGG Sbjct: 121 EAIRMAEDRELFRVAMGEIGLECPSAAVAHTLEEALDIQTRVGYPTIIRPSFTLGGSGGG 180 Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240 IAYNREE +I RGL+LSPT E+L++ES++GWKE+EMEVVRD DNCIIVCSIEN D M Sbjct: 181 IAYNREELIDIVTRGLELSPTTEVLVEESVLGWKEFEMEVVRDTADNCIIVCSIENLDPM 240 Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300 G+HTGDSITVAPAQTLTDKEYQ +R+AS+AVLR+IGV+TGGSNVQF +NP GR++VIEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINPHTGRVVVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG TPASFEPSIDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGLTPASFEPSIDYVVTKIP 360 Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDP-KVSLDDPE 419 RF FEKF A+ RLTTQMKSVGEVMA+GRT QES+QKALRGLE G GFDP ++ L + + Sbjct: 361 RFAFEKFPAADARLTTQMKSVGEVMAMGRTFQESMQKALRGLETGKVGFDPTELDLGNED 420 Query: 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEV 479 + +RRELK G +R++Y+AD FRAG+SV+ + L+ ID WFL QIEE++ E +VA Sbjct: 421 DMQTLRRELKAPGPERLFYVADGFRAGMSVEEIHALSFIDPWFLDQIEEIITAEGEVAAG 480 Query: 480 GITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATD 539 GI L+A LR+LKR GF+DARLA+L G EA +R LR + + PVYKRVD+CA EFAT Sbjct: 481 GIDSLDAARLRKLKRAGFSDARLAQLTGTNEAAVRALRRAHKVRPVYKRVDSCAGEFATG 540 Query: 540 TAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMV 599 TAY+YSTYE+ECEA PS +R+KIM+LGGGPNRIGQGIEFDYCCVHA+LALREDGYETIMV Sbjct: 541 TAYLYSTYEDECEAAPS-NRDKIMILGGGPNRIGQGIEFDYCCVHAALALREDGYETIMV 599 Query: 600 NCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGV 659 NCNPETVSTDYDTSDRLYFEP+TLEDVLEIV +E+PKGVIVQYGGQTPLKLARALEA GV Sbjct: 600 NCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTPLKLARALEANGV 659 Query: 660 PVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYV 719 PVIGTSPD+ID AEDRERFQ V+ L LKQP N + A+ A+EIGYPLVVRPSYV Sbjct: 660 PVIGTSPDSIDLAEDRERFQQLVDNLGLKQPPNRIARNDQEALLLAREIGYPLVVRPSYV 719 Query: 720 LGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE-MVLIGGI 778 LGGRAMEIVY E+DL RY + AV VSND+PVLLD FLD+AVEVDVD I D + VLIGG+ Sbjct: 720 LGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADSQGNVLIGGV 779 Query: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNE-- 836 MEHIE+AGVHSGDS+CSLP Y+LS E Q +R+QV +LA L V GLMN QFA++ E Sbjct: 780 MEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGLMNTQFAIQAGENG 839 Query: 837 ---VYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEV 893 VYL+EVNPRA+RTVPFVSKATG+PLAK+AAR MAGK+LAEQG TKE++P YYSVKE Sbjct: 840 EDIVYLLEVNPRASRTVPFVSKATGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEA 899 Query: 894 VLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGD 953 + PF KF GVDP+LGPEMRSTGEVMGVGR+F+ AFA+AQ G+A +SVR+ D Sbjct: 900 IFPFAKFQGVDPILGPEMRSTGEVMGVGRSFSAAFARAQEAGGIKAPPVGKAFVSVRDPD 959 Query: 954 KERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYI 1013 K+RV+ +A LL +G+ L AT GTA L + G+ +VNKV EGRPHI DRIKNGE YI Sbjct: 960 KQRVLPVAEALLAKGYSLVATRGTAAWLQQHGMECEIVNKVVEGRPHIVDRIKNGEIVYI 1019 Query: 1014 INTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQI 1072 +NTT GR AI DS IRR ALQ++V Y TT+ G A +L T V S+QE+H ++ Sbjct: 1020 VNTTEGRAAINDSFSIRREALQHRVTYSTTIAGAKALVHSLEFRGTGPVWSLQELHKEL 1078 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3123 Number of extensions: 120 Number of successful extensions: 14 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1073 Length of database: 1080 Length adjustment: 46 Effective length of query: 1027 Effective length of database: 1034 Effective search space: 1061918 Effective search space used: 1061918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate WP_057509125.1 ABB28_RS13565 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.29473.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29473.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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