Alignments for a candidate for glcB in Stenotrophomonas chelatiphaga DSM 21508

Align malate synthase A (EC 2.3.3.9) (characterized)
to candidate WP_057509261.1 ABB28_RS14270 malate synthase A

Query= ecocyc::MALATE-SYNTHASE
         (533 letters)



>NCBI__GCF_001431535.1:WP_057509261.1
          Length = 545

 Score =  501 bits (1290), Expect = e-146
 Identities = 267/520 (51%), Positives = 338/520 (65%), Gaps = 17/520 (3%)

Query: 21  EKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKI 80
           +  +L A  +  L  L     P R   LAAR+Q+Q   D G LPDF ++TA IR  DWK+
Sbjct: 28  QSALLPAPLLALLVSLHRAVEPGRQARLAARVQRQAFFDQGGLPDFRTDTAPIRAEDWKV 87

Query: 81  RGIPADLEDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAV 140
             +PA L DRRVEITGP + KMVINALN+  KVFMADFED+ AP W  ++ GQ +L  AV
Sbjct: 88  APLPAALLDRRVEITGPTDPKMVINALNSGAKVFMADFEDATAPTWGNLLAGQQSLIGAV 147

Query: 141 NGTISYTNEAG-----KIYQLKP--NPAVLICRVRGLHLPEKHVTWRGEAIPGSLFDFAL 193
            G + +T  A      K Y L+P    AVLI R RG HL EKHV   G+ + G LFD A+
Sbjct: 148 RGDLQFTAPASGSKPSKHYSLRPYEERAVLIVRPRGWHLDEKHVLVDGQRLAGGLFDAAV 207

Query: 194 YFFHNYQALLAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLP 253
           + +HN + L+A   GPYFYLPK QS +EAA W    S+ E    LP G IK T+LIETLP
Sbjct: 208 FAYHNARTLMANDRGPYFYLPKLQSMEEAALWETALSHIEGMLGLPHGQIKVTVLIETLP 267

Query: 254 AVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSR 313
           AVF+MDEILHALRD IVGLNCGRWDYIFSY+KT + + D+VLP+R  VTM +PFL AYS 
Sbjct: 268 AVFEMDEILHALRDRIVGLNCGRWDYIFSYLKTFRRHADKVLPERGQVTMTQPFLKAYSE 327

Query: 314 LLIKTCHKRGAFAMGGMAAFIP-SKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLA 372
           LLI+TCH+RGA AMGGMAA IP   D   N Q + +V+ADK  E   GHDGTW+AHP L 
Sbjct: 328 LLIQTCHRRGAHAMGGMAAQIPIGNDAAANEQAMARVRADKLREVTAGHDGTWVAHPALI 387

Query: 373 DTAMAVFNDILGSRKNQLEVMREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAW 432
             AMA+F++ +    NQ +V+R QD  +  DQL+A   G  +  G   N+ V V+Y+ AW
Sbjct: 388 PVAMAIFDEHMPG-ANQQQVLR-QDVRVDRDQLIARPPGSISRAGFEGNVEVCVRYLAAW 445

Query: 433 ISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQ-KTLSNGKPVTKALFRQMLGEEMKVIA 491
           + GNGCVPI+ LMEDAATAEISR+ +WQW+H   + L +G  +  AL    L +    + 
Sbjct: 446 LDGNGCVPIHNLMEDAATAEISRSQLWQWLHTPGQQLDDGTAIDAALLDNALAQ----LP 501

Query: 492 SELGEERF--SQGRFDDAARLMEQITTSDELIDFLTLPGY 529
           + LG+       GR D+A  L+ +++ +DEL DFLTLP Y
Sbjct: 502 ARLGDRATLPGGGRVDEAIALLAELSRADELNDFLTLPAY 541


Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 776
Number of extensions: 34
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 545
Length adjustment: 35
Effective length of query: 498
Effective length of database: 510
Effective search space:   253980
Effective search space used:   253980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_057509261.1 ABB28_RS14270 (malate synthase A)
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.9081.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9081.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.