Alignments for a candidate for nagA in Stenotrophomonas chelatiphaga DSM 21508

Align N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (characterized)
to candidate WP_057509307.1 ABB28_RS14525 N-acetylglucosamine-6-phosphate deacetylase

Query= reanno::Caulo:CCNA_00452
         (378 letters)



>NCBI__GCF_001431535.1:WP_057509307.1
          Length = 382

 Score =  379 bits (972), Expect = e-109
 Identities = 207/378 (54%), Positives = 251/378 (66%), Gaps = 2/378 (0%)

Query: 1   MPAALINGRVLTESGVVEGKAVLVKDGLILDVIE--AAQTPSDAKPRDLKGGLLVPGFID 58
           M   L N R+L      +  A++++DG IL V+   A Q     +  DL GG L+PGFID
Sbjct: 1   MKQVLRNARMLVGDEFRDDLALVIEDGRILAVLPDAAPQLGQADEQVDLGGGWLLPGFID 60

Query: 59  TQVNGGGGVLFNDAPTVETIATIGAAHRRFGTTGFLPTLISDDLRVVDQAMRATEEAIAR 118
            QVNGGGG LFN+ P V T+ TI AAHRRFGTT  LPTLISDDL+V+  A+ AT +AIA+
Sbjct: 61  VQVNGGGGALFNNTPDVATLRTIAAAHRRFGTTALLPTLISDDLQVMRAAIAATHDAIAQ 120

Query: 119 GVPGVLGLHIEGPFLNPKRKGIHDAGKFRVIDDEALALLTSLKRGKTLVTLAPERTTPQI 178
            VPGV+G+H+EGP++ P RKG HD  KFRV D + +AL  SL  G TL+TLAPER   + 
Sbjct: 121 QVPGVIGIHLEGPYIAPARKGTHDVSKFRVPDADEIALAASLDNGVTLLTLAPERVPLET 180

Query: 179 IRRLADAGVIVAAGHTNALYATMRQALEHGLTGFTHLFNAMSPLTSREPGAVGAALESPD 238
           IR L + GVIVAAGHT A Y  +R  L+ G+ GFTHL+NAMSPL  REPGAVGAALE  D
Sbjct: 181 IRALVERGVIVAAGHTAASYEEVRAGLDAGIRGFTHLYNAMSPLQGREPGAVGAALEDRD 240

Query: 239 AWCGIIVDGRHVDPVVLKIALRTRALDRFMLVTDAMPTVGLPDKRFNLQGRDIRVVDGVC 298
           +W GIIVDG HV P  L++AL  +   R +LVTDAMP VG  D  + L G  I  VDGV 
Sbjct: 241 SWVGIIVDGVHVHPGSLRVALAAKPRGRLLLVTDAMPPVGADDPSYELYGEIITAVDGVV 300

Query: 299 VDDHGTLAGSDLDMIGAVRNAIDLLDLSLDDAVMMASHAPASFLGLGHGRGLIAPGYAAD 358
            +  G+LAGS LDM  AVRN + LL   L +A  MAS  PA FL +    G IA G+ AD
Sbjct: 301 RNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPARFLNVDDRLGHIAEGFQAD 360

Query: 359 LCLLNDRLEVAATWIDGQ 376
           L LL+D L+V  TWI GQ
Sbjct: 361 LVLLDDALQVRGTWIAGQ 378


Lambda     K      H
   0.321    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 470
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 382
Length adjustment: 30
Effective length of query: 348
Effective length of database: 352
Effective search space:   122496
Effective search space used:   122496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_057509307.1 ABB28_RS14525 (N-acetylglucosamine-6-phosphate deacetylase)
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.13206.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13206.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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