Alignments for a candidate for gcvT in Stenotrophomonas chelatiphaga DSM 21508

Align aminomethyltransferase; EC 2.1.2.10 (characterized)
to candidate WP_057687195.1 ABB28_RS15055 glycine cleavage system aminomethyltransferase GcvT

Query= CharProtDB::CH_000563
         (364 letters)



>NCBI__GCF_001431535.1:WP_057687195.1
          Length = 370

 Score =  381 bits (979), Expect = e-110
 Identities = 202/368 (54%), Positives = 249/368 (67%), Gaps = 12/368 (3%)

Query: 1   MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGS 60
           M Q+T L + H   GA+MVDF GW MP+HYGSQ+DEHH VR +AG+FDVSHMT+VDLRG 
Sbjct: 1   MTQKTLLNDSHRALGAKMVDFGGWDMPIHYGSQLDEHHLVRREAGVFDVSHMTVVDLRGE 60

Query: 61  RTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREK 120
           + + FLR LLAN V KL  +GKALYS MLN  GGVIDDLIVYY  +DFFR+VVN++TREK
Sbjct: 61  QVKPFLRRLLANSVDKLKVTGKALYSCMLNERGGVIDDLIVYYLADDFFRMVVNASTREK 120

Query: 121 DLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAG 180
           DL+W+T  A PFG+ +  R DL+++AVQGP A+     L + A    +  +  F   +  
Sbjct: 121 DLAWLTAQAAPFGVAVQQRPDLAILAVQGPQARDAVIGLVDAAGAATLAKLARFAATEVT 180

Query: 181 D-----LFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNL 235
                 LF+A TGYTGE G+EI LP +    FW  L++AGVKP GLGARDTLRLEAGMNL
Sbjct: 181 SADGVALFVARTGYTGEDGFEILLPQDAVVAFWNQLLQAGVKPAGLGARDTLRLEAGMNL 240

Query: 236 YGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHG-TEKLVGLVMTEKGVLRN 294
           YGQ+MDE I+P  A + WT++ +   RDFIGR+ LE Q+  G   +++GLVM EKGVLR+
Sbjct: 241 YGQDMDEAITPYEAALAWTVSLDEG-RDFIGRDVLEAQKAAGDARQMIGLVMDEKGVLRH 299

Query: 295 ELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGIGETAIVQIRNREMPVKVTKP 354
              V     QG      I SGTFSPTL   IA ARVP G      V IR R +PV+V K 
Sbjct: 300 GQAVLTAGGQGE-----ILSGTFSPTLAKGIAFARVPAGELGAVSVDIRGRAVPVRVVKF 354

Query: 355 VFVRNGKA 362
            FVR G+A
Sbjct: 355 PFVREGQA 362


Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 457
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 370
Length adjustment: 30
Effective length of query: 334
Effective length of database: 340
Effective search space:   113560
Effective search space used:   113560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_057687195.1 ABB28_RS15055 (glycine cleavage system aminomethyltransferase GcvT)
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.17039.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17039.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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