Alignments for a candidate for trpA in Stenotrophomonas chelatiphaga DSM 21508

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_057687221.1 ABB28_RS15195 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_001431535.1:WP_057687221.1
          Length = 269

 Score =  300 bits (769), Expect = 2e-86
 Identities = 164/267 (61%), Positives = 194/267 (72%), Gaps = 2/267 (0%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           +SR+D RF  L+ A R  LIPF+TAGDPS E  V +MHALV+AGAD++ELGVPFSDPMAD
Sbjct: 3   VSRLDARFQRLRDAQRKALIPFITAGDPSLEATVPVMHALVEAGADVLELGVPFSDPMAD 62

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GP IQ +SERA+A+G GL  VL  VA FR  D+DTP+VLMGYLNP+E HGYARFA EAV 
Sbjct: 63  GPTIQRSSERALARGAGLRYVLQAVAEFRSRDSDTPVVLMGYLNPVEIHGYARFATEAVA 122

Query: 121 AGVDGVLLVDCPLEESAVLQPLRD-AGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFA 179
           AGVDG+LLVD P EE+       D AGL  +LLA+PTT  +R   L G A G+LYYVSFA
Sbjct: 123 AGVDGILLVDLPPEEAHEANEAFDAAGLALVLLASPTTSDARADTLLGLARGYLYYVSFA 182

Query: 180 GITGAAHLSTGDIA-ARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDR 238
           G+TGA+ L   D A AR+  +RARA  PV  GFGI+DA SA A+A  AD VV+GSALV  
Sbjct: 183 GVTGASDLLDHDAAGARLQALRARASVPVVAGFGIKDAGSAAAMARQADGVVVGSALVSV 242

Query: 239 LAGATDAGEITRRTQAFLAPIRAALDA 265
           LA AT   +  +   AFLAP+R ALDA
Sbjct: 243 LAQATTVEDAVQAAGAFLAPLRQALDA 269


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 280
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 269
Length adjustment: 25
Effective length of query: 241
Effective length of database: 244
Effective search space:    58804
Effective search space used:    58804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_057687221.1 ABB28_RS15195 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.7166.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7166.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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