Alignments for a candidate for metX in Stenotrophomonas chelatiphaga DSM 21508

Align L-serine/homoserine O-acetyltransferase; Homoserine O-trans-acetylase; EC 2.3.1.30; EC 2.3.1.31 (characterized)
to candidate WP_057687234.1 ABB28_RS15260 homoserine O-acetyltransferase

Query= SwissProt::D2Z028
         (374 letters)



>NCBI__GCF_001431535.1:WP_057687234.1
          Length = 370

 Score =  471 bits (1213), Expect = e-137
 Identities = 235/370 (63%), Positives = 281/370 (75%), Gaps = 3/370 (0%)

Query: 1   MREFIPPASRFIELPDGFAMRRGGALYGARIAYETFGSLNAARDNAVLVLTGLSPDAHAA 60
           M EFIPP + F  LP  F  +RGGAL   R+AYET+G+L+A   NA+L++TGLSPDAHAA
Sbjct: 1   MTEFIPPGTLFHALPSPFPFKRGGALTAGRVAYETWGTLDADAGNAILIVTGLSPDAHAA 60

Query: 61  SRPDDPTPGWWEAMVGPGKPVDTDLWHVICVNSLGSCKGSTGPASTDPRTGEPYRLSFPE 120
           S   +P  GWWE MVGPGKP+DTD W VICVNSLGSCKGSTGPAS D  TG+PYRLSFPE
Sbjct: 61  SNAANPATGWWEGMVGPGKPIDTDRWFVICVNSLGSCKGSTGPASIDAATGKPYRLSFPE 120

Query: 121 LSIEDIADAAAHTVRALGISRLACVVGASMGGMSALALLARHPELARTHISLSGAVHALP 180
           LS+ED A A+   VRALGI++LAC+VG SMGGM+ALALL  HP +AR+HI++SG+  ALP
Sbjct: 121 LSVEDGARASVEVVRALGITQLACLVGNSMGGMTALALLLLHPGIARSHINISGSAQALP 180

Query: 181 FSIAVRSLQREAIRSDPGWLQGHYDEGEGPRRGMLTARKLGMMTYRSAQEWDCRFGRTRI 240
           FSIA+RSLQREAIR DP W  G YD+   P  GM  ARKLG++TYRSA EWD RFGR R+
Sbjct: 181 FSIAIRSLQREAIRLDPQWNGGQYDDANYPESGMRMARKLGVITYRSALEWDGRFGRVRL 240

Query: 241 GERRRADQGRFGPEFEVESYLDFHAQRFADRFDPNSYLYLSHAMDQFDLGDGGGGGGGAP 300
            +  +AD   FG EF+VESYL+ HA+RF   FDPN YLYLS +MD FDL +   G G   
Sbjct: 241 -DSDQADDDPFGLEFQVESYLEGHARRFVRFFDPNCYLYLSRSMDWFDLAE--HGNGDVM 297

Query: 301 GALSRMRVERALVMGARTDILFPLSQQQEIADGLSAGGADVSFLPVDTPAGHDAFLVDIE 360
             L+ ++VE+AL +GA TDILFP+ QQQ+IADGL AGGA+  F+ +D+P GHDAFLVD E
Sbjct: 298 AGLATIKVEKALAIGANTDILFPVQQQQQIADGLRAGGAEAHFIGLDSPQGHDAFLVDFE 357

Query: 361 RFGPPVAKFL 370
           RFGP V  FL
Sbjct: 358 RFGPAVRGFL 367


Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 498
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 370
Length adjustment: 30
Effective length of query: 344
Effective length of database: 340
Effective search space:   116960
Effective search space used:   116960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_057687234.1 ABB28_RS15260 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.1441.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1441.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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