Align Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate WP_057687520.1 ABB28_RS16835 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Query= SwissProt::Q8ZRS8
(865 letters)
>NCBI__GCF_001431535.1:WP_057687520.1
Length = 863
Score = 1261 bits (3264), Expect = 0.0
Identities = 625/859 (72%), Positives = 728/859 (84%), Gaps = 8/859 (0%)
Query: 1 MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKTPPVGEEEFLLDLLINRVPPGVDEA 60
MLE YR HVAERAA GI P PL A Q A ++ELLK PP GE EFLLDLL +RVP GVD+A
Sbjct: 1 MLEAYRHHVAERAALGIPPLPLTAQQTADVIELLKNPPAGEAEFLLDLLTHRVPAGVDDA 60
Query: 61 AYVKAGFLAAVAKGDTTSPLVSPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS 120
A VKA +LAA+A G +PL+S E+A ELLGTM GGYN+ PL+ LDDA + IAA AL
Sbjct: 61 AKVKASYLAAIAFGSEQNPLISRERATELLGTMLGGYNVAPLVQLLDDATVGSIAAAALK 120
Query: 121 HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLSRPPLAEKITVTVFKVTGETNTD 180
+TLL+FD F+DV+EKAKAGN A+ V+QSWADAEWF SRP +A+ +T+TVFKV GETNTD
Sbjct: 121 NTLLVFDAFHDVQEKAKAGNANAQSVLQSWADAEWFTSRPEVAQSMTLTVFKVPGETNTD 180
Query: 181 DLSPAPDAWSRPDIPLHAQAMLKNARE--GIEPDQPGVVGPIKQIEALQKKGYPLAYVGD 238
DLSPAPDA +RPDIPLHA AMLKN R P++ G GPI++I +L+ KG+ +AYVGD
Sbjct: 181 DLSPAPDATTRPDIPLHALAMLKNKRPDAAFVPEEDGKRGPIQEILSLKDKGHLVAYVGD 240
Query: 239 VVGTGSSRKSATNSVLWFMGDDIPNVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDV 298
VVGTGSSRKSATNSVLWF G+DIP +PNKR GG+CLG KIAPIF+NTMEDAGALPIE+DV
Sbjct: 241 VVGTGSSRKSATNSVLWFTGEDIPFIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDV 300
Query: 299 SNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAR 358
+ + GDVI++ PY G+ + GE++A F++K+DVL DEVRAGGRIPLI+GRGLT KAR
Sbjct: 301 TQMEHGDVIELRPYDGKALKN--GEVIAEFQVKSDVLFDEVRAGGRIPLIVGRGLTAKAR 358
Query: 359 EALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRACGV---KGIRPGAYCEPKMTSVGSQD 415
EALG+P +D+FR A++ +GFSLAQKMVGRACG+ +G+RPG YCEPKMTSVGSQD
Sbjct: 359 EALGMPVTDLFRLPVQPADTGKGFSLAQKMVGRACGLPEGQGMRPGTYCEPKMTSVGSQD 418
Query: 416 TTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPG 475
TTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDV THHTLP+FI RGG+SLRPG
Sbjct: 419 TTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGISLRPG 478
Query: 476 DGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVR 535
DGVIHSWLNRMLLPDTVGTGGDSHTRFP+GISFPAGSGLVAFAAATGVMPLDMPESVLVR
Sbjct: 479 DGVIHSWLNRMLLPDTVGTGGDSHTRFPVGISFPAGSGLVAFAAATGVMPLDMPESVLVR 538
Query: 536 FKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFEL 595
FKGKMQPG+TLRDLV+AIPLYAIK GLLTV K GKKNIFSGRILEIEGLPDLKVEQAFEL
Sbjct: 539 FKGKMQPGVTLRDLVNAIPLYAIKAGLLTVAKAGKKNIFSGRILEIEGLPDLKVEQAFEL 598
Query: 596 TDASAERSAAGCTIKLNKEPIVEYLTSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLADP 655
+DASAERSAAGC++ L+K PI+EYLTSNI LL+WMIAEGY D R+L+RRI M++WLADP
Sbjct: 599 SDASAERSAAGCSVHLDKAPIIEYLTSNITLLQWMIAEGYQDPRSLQRRIDKMKEWLADP 658
Query: 656 QLLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIG 715
QLL DADAEYAAVI+IDLADI EPI+ PNDPDD ++LS+V G KIDEVFIGSCMTNIG
Sbjct: 659 QLLAPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKMLSEVAGAKIDEVFIGSCMTNIG 718
Query: 716 HFRAAGKLLDNHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGN 775
HFRAA KLL+ K +PT+LWVAPPT+MDA++LT EG+Y FG +GAR+E+PGCSLCMGN
Sbjct: 719 HFRAAAKLLEG-KRDIPTKLWVAPPTKMDASELTREGHYGTFGSAGARMEMPGCSLCMGN 777
Query: 776 QARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDK 835
QA+V +GATV STSTRNFPNRLG +NV+L SAELAA+ + +G++PT EEY V ++
Sbjct: 778 QAQVREGATVFSTSTRNFPNRLGRNSNVYLGSAELAAICSRLGRIPTKEEYMADVGVLEA 837
Query: 836 TAVDTYRYLNFDQLSQYTE 854
+ + YRY+NFDQ+ +Y E
Sbjct: 838 SGAEIYRYMNFDQIEEYQE 856
Lambda K H
0.317 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2096
Number of extensions: 78
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 865
Length of database: 863
Length adjustment: 42
Effective length of query: 823
Effective length of database: 821
Effective search space: 675683
Effective search space used: 675683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Align candidate WP_057687520.1 ABB28_RS16835 (bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase)
to HMM TIGR00117 (acnB: aconitate hydratase 2 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.26810.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26810.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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