Align Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate WP_057687523.1 ABB28_RS16850 aconitate hydratase AcnA
Query= SwissProt::O53166
(943 letters)
>NCBI__GCF_001431535.1:WP_057687523.1
Length = 917
Score = 1103 bits (2852), Expect = 0.0
Identities = 558/944 (59%), Positives = 694/944 (73%), Gaps = 43/944 (4%)
Query: 7 NSFGAHDTLKVGEKSYQIYRLDAVP---NTAKLPYSLKVLAENLLRNEDGS-NITKDHIE 62
+SF L VG K Y + L + + + LPYS+K+L ENLLR+EDG + KDHIE
Sbjct: 3 DSFSTRSQLDVGGKRYDYFSLPKLGQRFDISHLPYSMKILLENLLRHEDGGVTVGKDHIE 62
Query: 63 AIANWDPKAEPSIEIQYTPARVVMQDFTGVPCIVDLATMREAIADLGGNPDKVNPLAPAD 122
A+A WDPKAEP IEI + PARVV+QDFTGVPC+VDLA MR+A+ LGG+P+++NP P++
Sbjct: 63 AVATWDPKAEPEIEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGSPEQINPQIPSE 122
Query: 123 LVIDHSVIADLFGRADAFERNVEIEYQRNGERYQFLRWGQGAFDDFKVVPPGTGIVHQVN 182
LVIDHSV D+FG+ +A + N +IE+QRN ERY FLRWGQ AFD+FKVVPP TGIVHQVN
Sbjct: 123 LVIDHSVQVDVFGKPEALDLNGKIEFQRNQERYGFLRWGQKAFDNFKVVPPNTGIVHQVN 182
Query: 183 IEYLASVVMT--RDG--VAYPDTCVGTDSHTTMVNGLGVLGWGVGGIEAEAAMLGQPVSM 238
+E LA VVM +DG VAYPDT GTDSHTTM+NG+GVLGWGVGGIEAEAAMLGQP SM
Sbjct: 183 LENLARVVMAVDKDGTQVAYPDTVFGTDSHTTMINGIGVLGWGVGGIEAEAAMLGQPSSM 242
Query: 239 LIPRVVGFRLTGEIQPGVTATDVVLTVTEMLRQHGVVGKFVEFYGEGVAEVPLANRATLG 298
LIP+VVGF+LTG++ G TATD+VLTVT+MLR+HGVVGKFVEF+GEG+ +PLA+RAT+G
Sbjct: 243 LIPQVVGFKLTGQMPEGATATDLVLTVTQMLRKHGVVGKFVEFFGEGLQHLPLADRATIG 302
Query: 299 NMSPEFGSTAAIFPIDEETIKYLRFTGRTPEQVALVEAYAKAQGMWHDPKH-EPEFSEYL 357
NM+PE+G+T IFPID E++ YLR +GR EQ+ALVEAYAKAQG+WHD ++S L
Sbjct: 303 NMAPEYGATCGIFPIDHESLNYLRLSGRPEEQIALVEAYAKAQGLWHDADTAHAQYSATL 362
Query: 358 ELNLSDVVPSIAGPKRPQDRIALAQAKSTFREQIYHYVGNGSPDSPHDPHSKLDEVVEET 417
EL++ V PS+AGPKRPQDR+ L ++ +RE + N +V T
Sbjct: 363 ELDMGTVKPSLAGPKRPQDRVLLEDVQANYREALVGLTTNRDKK----------DVDVST 412
Query: 418 FPASDPGQLTFANDDVATDETVHSAAAHADGRVSNPVRVKSDELGEFVLDHGAVVIAAIT 477
F ++ G N+ +A + A DG+ F L GAVVIAAIT
Sbjct: 413 F-VNEGGGTAVGNEQLAKGQ----ADVELDGKA-------------FRLKDGAVVIAAIT 454
Query: 478 SCTNTSNPEVMLGAALLARNAVEKGLTSKPWVKTTIAPGSQVVNDYYDRSGLWPYLEKLG 537
SCTNTSNP VM+GA LLARNA +GL +PWVKT++ PGS+VV DY ++G+ LEKLG
Sbjct: 455 SCTNTSNPAVMIGAGLLARNAAARGLNRQPWVKTSLGPGSRVVTDYLSKAGVLTELEKLG 514
Query: 538 FYLVGYGCTTCIGNSGPLPEEISKAVNDNDLSVTAVLSGNRNFEGRINPDVKMNYLASPP 597
FY+VGYGCTTCIGNSGPLP E+S + DL VT+VLSGNRNFEGR++P+VKMNYLASPP
Sbjct: 515 FYVVGYGCTTCIGNSGPLPAEVSAGIALGDLVVTSVLSGNRNFEGRVHPEVKMNYLASPP 574
Query: 598 LVIAYALAGTMDFDFQTQPLGQDKDGKNVFLRDIWPSQQDVSDTIAAAINQEMFTRNYAD 657
LV+AYA+AGT D D T+PLG DG+ V+LRDIWPS +++ D IAA + EMF +NYAD
Sbjct: 575 LVVAYAIAGTTDIDLTTEPLGTGSDGQPVYLRDIWPSNKEIGDVIAATLGPEMFKQNYAD 634
Query: 658 VFKGDDRWRNLPTPSGNTFEWDPNSTYVRKPPYFEGMTAKPEPVGNISGARVLALLGDSV 717
VFKGD RW + +P G+ +EWD STY++ PPYF+GMT + + ++ GARV+ L GDS+
Sbjct: 635 VFKGDSRWNTIASPDGDLYEWDDGSTYIKNPPYFDGMTMQVGSIDDVHGARVMGLFGDSI 694
Query: 718 TTDHISPAGAIKPGTPAARYLDEHGVDRKDYNSFGSRRGNHEVMIRGTFANIRLRNQLLD 777
TTDHISPAG IK +PA R+L E GV D+NS+GSRRGN +VM+RGTFANIR++N +
Sbjct: 695 TTDHISPAGNIKKESPAGRFLQERGVQPADFNSYGSRRGNDDVMVRGTFANIRIKNLMFG 754
Query: 778 DVSGGYTRDFTQPGG--PQAFIYDAAQNYAAQHIPLVVFGGKEYGSGSSRDWAAKGTLLL 835
GG T + GG + IYDAA Y A +PLVV GKEYG+GSSRDWAAKGTLLL
Sbjct: 755 GEEGGNTLYYPASGGEPEKLAIYDAAIKYKADGVPLVVLAGKEYGTGSSRDWAAKGTLLL 814
Query: 836 GVRAVIAESFERIHRSNLIGMGVIPLQFPEGKSASSLGLDGTEVFDITGIDVLNDGKTPK 895
GV+AVIAESFERIHRSNL+GMGV+PLQF G++A SLGLDG+EVFDITG L DG + K
Sbjct: 815 GVKAVIAESFERIHRSNLVGMGVLPLQFRNGENAQSLGLDGSEVFDITG---LKDGAS-K 870
Query: 896 TVCVQATKGDGATIEFDAVVRIDTPGEADYYRNGGILQYVLRNI 939
V A K DG + F+A V + TP E +Y+R+GG+LQYVLR +
Sbjct: 871 RATVAAKKADGTVVTFEASVMLLTPKEVEYFRHGGLLQYVLRQL 914
Lambda K H
0.316 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2508
Number of extensions: 133
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 943
Length of database: 917
Length adjustment: 43
Effective length of query: 900
Effective length of database: 874
Effective search space: 786600
Effective search space used: 786600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Align candidate WP_057687523.1 ABB28_RS16850 (aconitate hydratase AcnA)
to HMM TIGR01341 (acnA: aconitate hydratase 1 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.21909.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21909.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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