Alignments for a candidate for argG in Pseudarthrobacter sulfonivorans Ar51

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_058929438.1 AU252_RS02875 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_001484605.1:WP_058929438.1
          Length = 401

 Score =  328 bits (841), Expect = 2e-94
 Identities = 169/389 (43%), Positives = 247/389 (63%), Gaps = 3/389 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60
           +IVLAYSGGLDTS+ + W+ E   AEVIA   D+GQG E +E  R++AL  GA +A   D
Sbjct: 4   RIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGESLETIRQRALGCGAVEAYVAD 63

Query: 61  LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120
             +EF  ++  P ++A A+Y+G+Y L ++I+RP+I KHLV+ A E GA  +AHG TGKGN
Sbjct: 64  ASDEFANEYCMPTLKANALYQGHYPLVSAISRPVIVKHLVKAAREFGATTVAHGCTGKGN 123

Query: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180
           DQVRFE+    L PD+K IAP R+ +   R + IA+AE  G+P+  T++ PYS+D N+  
Sbjct: 124 DQVRFEVGIQTLGPDLKCIAPVRDLALT-RDKAIAFAEEKGLPIETTKKNPYSIDQNVWG 182

Query: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240
            + E G LED W  P K ++  T  PE  P AP+ V + F  G PVA++G R++P   ++
Sbjct: 183 RAVETGYLEDIWNAPTKDIYDYTATPE-FPPAPDEVTISFEAGVPVAIDGVRVTPLQAIK 241

Query: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300
            LN   G  GVGR+D+VE+R VG+KSR +YE PG   L  A + +E +T++RE    +  
Sbjct: 242 ELNRRAGAQGVGRIDVVEDRLVGIKSREIYEAPGAMALITAHKHLEDITVEREQARFKAT 301

Query: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360
           +  ++AELVY G W++P + +L A+ +   + VTG  R+ L+ G   V GR++  SLY  
Sbjct: 302 VGQRWAELVYDGQWFSPLKRSLDAFIEDTQKHVTGDIRMVLHGGQAIVNGRRSETSLYDF 361

Query: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRV 389
           DL ++D    +DQ  A GFI++  +  +V
Sbjct: 362 DLATYDTGDTFDQSMARGFIELWGMSAKV 390


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 434
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 401
Length adjustment: 31
Effective length of query: 369
Effective length of database: 370
Effective search space:   136530
Effective search space used:   136530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_058929438.1 AU252_RS02875 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15513.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15513.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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