Alignments for a candidate for argI in Pseudarthrobacter sulfonivorans Ar51

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_058929439.1 AU252_RS02885 ornithine carbamoyltransferase

Query= BRENDA::P0A5M9
         (307 letters)



>NCBI__GCF_001484605.1:WP_058929439.1
          Length = 344

 Score =  356 bits (913), Expect = e-103
 Identities = 181/309 (58%), Positives = 222/309 (71%), Gaps = 4/309 (1%)

Query: 3   RHFLRDDDLSPAEQAEVLELAAELKKDPVSRRPLQGP----RGVAVIFDKNSTRTRFSFE 58
           RHFL+D DLSPAEQAEVL+LA  +K  P S +P  G     + VAVIFDK STRTR SF 
Sbjct: 15  RHFLKDTDLSPAEQAEVLDLAVRMKAAPYSVQPFAGEGNGRKTVAVIFDKTSTRTRVSFA 74

Query: 59  LGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMASVATVP 118
            GIA +GG+A++++ G  Q+G  E+++DTAKVL R V  IVWRT     L AMA  + VP
Sbjct: 75  TGIADMGGNALIINPGEAQIGHKESVEDTAKVLERMVSTIVWRTGAHSGLVAMAENSRVP 134

Query: 119 VINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTV 178
           VINAL D++HPCQ+LADL  + E KG L+GL +SY GD ANNMA+S LL GVTAG+HV +
Sbjct: 135 VINALCDDYHPCQLLADLLAVKEHKGELKGLTMSYLGDAANNMANSYLLAGVTAGMHVRI 194

Query: 179 AAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDR 238
           A PEG+LP   + AAAE RA  TG SV VT DA  A  GADV+ TDTW SMGQE +   R
Sbjct: 195 AGPEGYLPAAEIVAAAEERAAQTGGSVLVTTDAAVALKGADVVATDTWVSMGQEAEKEAR 254

Query: 239 VKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHAQKA 298
           ++ FR + ++   +A A  DA+VLHCLPA+RG EI+  V+DGP S VWDEAENRLHAQKA
Sbjct: 255 LQLFREYSVDEAAMAHAADDAVVLHCLPAYRGYEISAGVIDGPQSIVWDEAENRLHAQKA 314

Query: 299 LLVWLLERS 307
           L+ WL+ RS
Sbjct: 315 LMAWLMHRS 323


Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 281
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 344
Length adjustment: 28
Effective length of query: 279
Effective length of database: 316
Effective search space:    88164
Effective search space used:    88164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_058929439.1 AU252_RS02885 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.21131.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21131.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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