Alignments for a candidate for argH in Aquimarina longa SW024

Align arginosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_062060221.1 N456_RS18080 argininosuccinate lyase

Query= reanno::Btheta:353259
         (446 letters)



>NCBI__GCF_001401755.1:WP_062060221.1
          Length = 425

 Score =  498 bits (1282), Expect = e-145
 Identities = 231/417 (55%), Positives = 319/417 (76%)

Query: 4   KLWEKSVQVNKDIERFTVGRDREMDLYLAKHDVLGSMAHITMLESIGLLTKEELEQLLAE 63
           KLW+K +  +K I+ FTVG DR++DL +AK+DV  ++AH  ML  IGLL+ E++  +  E
Sbjct: 2   KLWDKGLPTDKKIDAFTVGNDRQLDLIIAKYDVQATLAHAKMLYKIGLLSDEDISGIERE 61

Query: 64  LKTIYASVERGEFIIEEGVEDVHSQVELMLTRRLGDVGKKIHSGRSRNDQVLLDLKLFTR 123
           L  +   +E+G FIIE+  EDVHS++E  LT+R+GD GK+IH+ RSRNDQVL+ + L+ +
Sbjct: 62  LTNLAEDIEKGTFIIEDEFEDVHSKIEFELTQRIGDAGKRIHTARSRNDQVLVAMHLYLK 121

Query: 124 TQIREIAEAVEQLFHVLILQSERYKNVLMPGYTHLQIAMPSSFGLWFGAYAESLVDDMQF 183
            ++ ++   +++L + L++ +E+YKNVL+PGYTHLQIAMPSSFGLWF AYAES +DD+ F
Sbjct: 122 DELLQLKSQIKELSNHLLIAAEKYKNVLLPGYTHLQIAMPSSFGLWFSAYAESFIDDLYF 181

Query: 184 LQAAFRMCNRNPLGSAAGYGSSFPLNRTMTTDLLGFDSLNYNVVYAQMGRGKLERNVAFA 243
           + AA ++ ++NPLGSAAGYGSSFP++R  TT  LGF++L YNVV AQM RGK E++VAFA
Sbjct: 182 VNAALKVVDQNPLGSAAGYGSSFPIDRDFTTKELGFETLKYNVVAAQMSRGKSEKSVAFA 241

Query: 244 LATIAGTISKLAFDACMFNSQNFGFVKLPDDCTTGSSIMPHKKNPDVFELTRAKCNKLQS 303
           +++IAGT+SK A D C++ SQNF F+ +P + TTGSSIMPHKKNPDVFEL R KCNK+Q+
Sbjct: 242 MSSIAGTLSKFAMDVCLYMSQNFSFIHIPTEFTTGSSIMPHKKNPDVFELIRGKCNKIQA 301

Query: 304 LPQQIMMIANNLPSGYFRDLQIIKEVFLPAFQELKDCLQMTTYIMNEIKVNEHILDDDKY 363
           LP ++ ++ NNLPSGY RD+Q++KE  +PA Q LK  ++MTTY ++ I+VN  ILDD KY
Sbjct: 302 LPYELSLLTNNLPSGYHRDMQLLKEGIIPAIQNLKASIEMTTYALDTIRVNTTILDDTKY 361

Query: 364 LFIFSVEEVNRLAREGMPFRDAYKKVGLDIEAGKFTHDKQVHHTHEGSIGNLCNDEI 420
            ++FSV+ +N+L  +GM FRDAY K+G DIE G +  DK   H+H GSI NLC + I
Sbjct: 362 DYLFSVDTLNKLVMQGMSFRDAYIKIGQDIEKGNYKPDKNTTHSHIGSINNLCLENI 418


Lambda     K      H
   0.322    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 526
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 425
Length adjustment: 32
Effective length of query: 414
Effective length of database: 393
Effective search space:   162702
Effective search space used:   162702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_062060221.1 N456_RS18080 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.30476.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30476.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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